Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15d04
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        29   0.029
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.1  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   7.7  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = -2

Query: 595 NVYMNWNVVNSTRIELCEAKENEAYSNLQNCTNARINI------SRSNKRVASYNVNMLK 434
           +VY+ WN+ +  R+ L   +  EA    +  T +R  +         ++R    +   L+
Sbjct: 257 SVYLRWNLTSGERVGLVGGRVKEALRIARQMTTSRKKVLPYYWYKYQDRRDTDLSRADLE 316

Query: 433 SELEE-NDMSDNKFIVQFKSDDLN 365
           + L +  D+  + FI+   SDD+N
Sbjct: 317 ATLRKITDLGADGFIIWGSSDDIN 340


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 571 VNSTRIELCEAKENEAYSNLQNCTNAR 491
           +   RI+  + KENE Y+NL    + +
Sbjct: 325 ITPKRIQYAQHKENELYANLMKIVHEK 351


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 571 VNSTRIELCEAKENEAYSNLQNCTNAR 491
           +   RI+  + KENE Y+NL    + +
Sbjct: 363 ITPKRIQYAQHKENELYANLMKIVHEK 389


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 532 NEAYSNLQNCTNARINISRSNKRVASYNVN 443
           N    N+QN  N   N  ++NK+ A+   N
Sbjct: 417 NNQNDNIQNTNNQNDNNQKNNKKNANNQKN 446


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 463  VASYNVNMLKSELEENDMSDNKFIVQFKSDDLNV 362
            VAS ++N+      ++     K+I+Q+K  D  +
Sbjct: 919  VASRSINVKWQHKSQDTTEVTKYILQYKEGDAGI 952


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 463  VASYNVNMLKSELEENDMSDNKFIVQFKSDDLNV 362
            VAS ++N+      ++     K+I+Q+K  D  +
Sbjct: 915  VASRSINVKWQHKSQDTTEVTKYILQYKEGDAGI 948


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 312 SPFSTSTQIKKPKRIRYKNYVQILIKSQ 229
           +PF+T   +   K+ R K Y+ I  +++
Sbjct: 14  TPFTTQQLLSLEKKFREKQYLTIAERAE 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,395
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)