Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c23
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    81   1e-16
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    28   0.98 
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    28   1.3  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    27   2.3  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   2.3  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    26   4.0  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   4.0  
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...    26   5.2  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   5.2  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   6.9  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
 Frame = -2

Query: 633 SVVVILRYKEISQRILDLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIR 454
           S+  +    + S   L ++AY+LTP+ +A ++E  +T  +L +  +   N+  E+PIVI 
Sbjct: 136 SIAFLYDLSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASSLNSHNLTPSNVIRELPIVIH 195

Query: 453 NSPLTNIMISELTEM-------------------IPEEEGSKFLDLGTASVLEGQLRSLM 331
           NS L   ++  L+E                    +P  E     ++   +     +  L+
Sbjct: 196 NSHLATCLLHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNIELLL 255

Query: 330 ERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFKP 151
           E  DE + E      +Q+ + R+Q    +W+ KR  ENA RAA++  PLP +D  ++FK 
Sbjct: 256 ESTDEFHYEQGNLGFHQRQLAREQAKIQQWIAKRKAENANRAAENLQPLPLDDWKRIFKL 315

Query: 150 HPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKL 49
              P  L+ ++++ QI   S  I +  S  L+KL
Sbjct: 316 PAEPRLLDSLLISSQI-MKSTQIDEQSSAFLSKL 348


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 189 PLPEEDVNKLFKPHPVPPRLNPMIVAGQIDTY 94
           PL +E+  +L+ P PV   + P    G ID Y
Sbjct: 503 PLYDEEATQLYTPKPVVANIVPKNAYGNIDLY 534


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 292 ELDRFLIQFINTFHETAKLSFENRCSTQIQK--LGSFLFRYHL-GELRDHYVS*W-RVPD 459
           E++R L+ F+  F  T K   ++ C T  +   L  F + + L   L+D     W RV +
Sbjct: 285 EIERKLLSFVMLFENTDKCLIDSECLTSKKSFTLNDFTYDFRLPWYLKDDSWKRWCRVKE 344

Query: 460 NNWH 471
            +W+
Sbjct: 345 YSWN 348


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 207 AAKDETPLPEEDVNKLFKPHPVPPRLNPMIVA 112
           AA    P PEED+ K+F  H +  +  P+I +
Sbjct: 220 AAGITAPKPEEDLEKVFSSHGLTDKSVPIITS 251


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/96 (19%), Positives = 36/96 (37%)
 Frame = -2

Query: 357 LEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPE 178
           LE + +S++    +LN  A+    +    +          + ++  N       ET LP 
Sbjct: 508 LEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDGTIIKSTTNVYLKVNSETSLPT 567

Query: 177 EDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFC 70
            D+ +       P +L+P I         +  S+FC
Sbjct: 568 GDIVEWQNDITKPTKLDPNISFDNCFIVDREASKFC 603


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 555 AIAMYKEGDYTPEALRNLKIGYENLFIEVPIVI 457
           AIA+ ++G +T    RN KI +   ++ V IVI
Sbjct: 553 AIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVI 585


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
 Frame = -2

Query: 513 LRNLKIGYENLFIEV--PIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLR 340
           L N +IG+ +  IE+  PI  R S   +       E I   E  K +       L  ++ 
Sbjct: 63  LLNHQIGFADACIEIYKPISGRASDPESYEQEGNAEGIEAAEAYKEIVYDLQKNLASEMD 122

Query: 339 SLMERVDELNQEAIKFNR-YQQLVVRQQQ-----DKHRWMVKRAQENAARAAKDETPLPE 178
            +  R+     E +K  +   +L++++       D+HR   K+ QE   ++ KDE  L E
Sbjct: 123 VINTRIVNPTGELLKIVKDVDKLLLKRDHKQLDYDRHRSSFKKLQEKKDKSLKDEKKLYE 182

Query: 177 ED 172
            +
Sbjct: 183 AE 184


>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 258 QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 130
           ++KH  W V        RAA++   L E+D  +LF+ + +  RL
Sbjct: 37  RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 258 QDKHR-WMVKRAQENAARAAKDETPLPEEDVNKLFKPHPVPPRL 130
           ++KH  W V        RAA++   L E+D  +LF+ + +  RL
Sbjct: 37  RNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRL 80


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -2

Query: 522 PEALRNLKIGYENLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVL 355
           P  + N+   +++  +EV  V    PL  I I  L  ++P E    F +    S+L
Sbjct: 288 PIPIYNVNTTFDHPTVEVKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLL 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,104
Number of Sequences: 5004
Number of extensions: 52544
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)