Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c23
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 137 6e-33
11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754 34 0.11
08_02_0499 - 17820615-17822516,17823224-17823373,17823491-178235... 31 0.77
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 4.1
05_01_0009 - 64754-65073,65202-65469 28 5.4
11_06_0549 + 24868344-24868930,24869740-24869957,24870018-248701... 28 7.1
05_07_0262 + 28769335-28769391,28769732-28769855,28770175-287702... 28 7.1
12_02_0143 - 14354323-14354463,14354733-14354837,14355515-143558... 27 9.4
04_03_0661 - 18468244-18469580,18469610-18469619 27 9.4
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364... 27 9.4
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988... 27 9.4
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425... 27 9.4
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 137 bits (332), Expect = 6e-33
Identities = 78/203 (38%), Positives = 111/203 (54%), Gaps = 2/203 (0%)
Frame = -2
Query: 630 VVVILRYKEISQRILDLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRN 451
V ++ +Q +L LKA +LT + +Y+ T E LR K+ + ++F E+PI + N
Sbjct: 143 VCIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPIKVSN 202
Query: 450 SPLTNIMISELTEMIPEEEGS-KFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQL 274
S L + ++EL P + L L TA +E L L+ +D+L+ E KF Y +
Sbjct: 203 SALVSAFMTELEPESPVSQCDFDRLKLSTAPFMERNLEFLIGCMDDLSSEQNKFQYYYRN 262
Query: 273 VVRQQQDKHRWMVKRAQENAARAAKDETPLPEED-VNKLFKPHPVPPRLNPMIVAGQIDT 97
V RQQ + W+ KR QEN AR A E PLPEED N +FKP P P RL +V QI +
Sbjct: 263 VSRQQSQQQAWLQKRRQENMARKAAGEEPLPEEDPSNPIFKPIPEPSRLEGYLVTNQISS 322
Query: 96 YSQHISQFCSQSLAKLYLTQALQ 28
Y HI+ Q+ +LYL +ALQ
Sbjct: 323 YCNHINGVAGQNFNRLYLMKALQ 345
>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
Length = 203
Score = 33.9 bits (74), Expect = 0.11
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Frame = -2
Query: 633 SVVVILRYKEISQRILDLKAYRLTPQAIAMYKEGDYTPEAL-----RNLKIGYENLFIEV 469
+VV + R KE+ R+L+ + + QAI E E + R +++G + + EV
Sbjct: 37 AVVSLRRQKEVELRLLEEETAKRVEQAIRKQVEESLNSEEIKHEIQRRIEVGRKRIHEEV 96
Query: 468 PIVI---RNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAI 298
+ I + + L E EE K L+ E Q++ ME Q+
Sbjct: 97 LVQIEKEKEAALVEAQHKAERERKEREELEKKLEEERKKAEEAQMKEAME------QQQK 150
Query: 297 KFNRYQQLVVRQQQDKHRWMVKRAQE 220
+ RYQ+L R Q+++ M ++ E
Sbjct: 151 ELERYQEL-ERLQKEREEAMKRKQME 175
>08_02_0499 - 17820615-17822516,17823224-17823373,17823491-17823568,
17823948-17824061,17824145-17824297,17826928-17827071,
17827162-17827516,17828574-17828741,17829522-17829751,
17829916-17830049,17830686-17830749
Length = 1163
Score = 31.1 bits (67), Expect = 0.77
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = -2
Query: 342 RSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNK 163
++ M++V +LNQ+ + +QQ V +QQQ + + ++ Q + A P++ ++
Sbjct: 956 QNFMQQVQQLNQQMV---LWQQQVQQQQQQQQQQQQQQQQLQLQQHALPVQQQPDQKYSQ 1012
Query: 162 LFKPHPVPPRLN-PMIVAGQIDTYSQHI--SQFCSQSLAKLYLTQALQNAKEAKQ 7
L N P + Q+D S+ + Q Q ++YL Q Q ++ +Q
Sbjct: 1013 LPSSGDTRHEQNKPQKLESQMDHQSELVQQQQVYFQQQQQMYLMQQQQMYQQQQQ 1067
>03_03_0246 +
15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -2
Query: 360 VLEGQLRS--LMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETP 187
VLE Q R+ ++ + +E + I+ +Q +V ++ W+ ++ + AA+ A+++
Sbjct: 487 VLEEQARAREIVRKQEEERERLIREEEERQRLVEEEARHAAWLAEQERLEAAKRAEEQRI 546
Query: 186 LPEEDVNK 163
EE+ K
Sbjct: 547 AREEEKRK 554
>05_01_0009 - 64754-65073,65202-65469
Length = 195
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -2
Query: 477 IEVPIV-IRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEA 301
I +P+ +RN+ MIS L P + D G L G++R L+ +VD++
Sbjct: 132 IRLPLTDVRNN--LQKMISSLLGRSPTATATASHDHGAKLALAGEMRGLLAKVDKMLSAT 189
Query: 300 IKFNRY 283
NR+
Sbjct: 190 TPANRH 195
>11_06_0549 +
24868344-24868930,24869740-24869957,24870018-24870175,
24870202-24870633,24870717-24871064
Length = 580
Score = 27.9 bits (59), Expect = 7.1
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Frame = -2
Query: 537 EGDYTPEALRNLKIGYENLFIEVPIVIRNSPLTNIM--ISELTEMIP---EEEGSKFLDL 373
E + PE LK E+ E PI + + +I+ + L P +E +
Sbjct: 217 EQNIFPETANKLKRHIESGKTEFPIHLDQAKYESILREVFPLATSKPHKVQEAAATAAAA 276
Query: 372 GTASVLEG-QLRSLMERVDELNQEAIKFNRYQQLV-----VRQQQDKHRWMVKRAQENAA 211
TA+ LE Q+ ++++ + + I QQL + + D+H A+EN
Sbjct: 277 TTAATLEKVQIEQIIDKAKQDILQCILQELQQQLPEADKSLEENGDEHATAAIEAKENKP 336
Query: 210 RAAKDET 190
AAKDET
Sbjct: 337 PAAKDET 343
>05_07_0262 +
28769335-28769391,28769732-28769855,28770175-28770266,
28770673-28771078,28772057-28772184,28772273-28772332,
28772814-28772963,28772999-28773061,28773062-28773217,
28773361-28773572,28773698-28773796,28774343-28774512,
28774592-28775040
Length = 721
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 183 PEEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLA 55
P++ +++ + H VP R+N + + +D Y H SQ +Q+ A
Sbjct: 607 PQQQISQAYGYHQVPARMNCVEQSQAMDAYKMH-SQSQTQAYA 648
>12_02_0143 -
14354323-14354463,14354733-14354837,14355515-14355815,
14356065-14356261,14356412-14356940,14357842-14358848
Length = 759
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -2
Query: 390 SKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLV 271
SKF +G + L+G++ S + DE EA + R+Q+ V
Sbjct: 160 SKFFPMGKTNALQGRISSFQQTRDESFPEA--WERFQEYV 197
>04_03_0661 - 18468244-18469580,18469610-18469619
Length = 448
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = -2
Query: 300 IKFNRYQQLVVRQQQDKHRWMVKRAQEN-AARAAKDETPLPEEDVNK 163
I+ + ++ +Q++ + +++ K+ QE AARAA++E EE+ +
Sbjct: 82 IQRRKEEEKAEKQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAKR 128
>04_03_0594 -
17733827-17735085,17735576-17735642,17736379-17736413,
17736810-17737665
Length = 738
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -2
Query: 489 ENLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASV-LEGQLRSLMERVDEL 313
+NL I I+ P+T I+ E+ E E+E + + A + L G+ R M++V E+
Sbjct: 612 KNLSIYFLYEIKGRPITEIVAPEVLEEATEDEINTVASIAQACLRLRGEERPTMKQV-EM 670
Query: 312 NQEAIK 295
+ ++++
Sbjct: 671 SLQSVR 676
>04_03_0588 +
17595299-17596151,17597519-17597665,17598562-17598837,
17599108-17599805
Length = 657
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -2
Query: 489 ENLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASV-LEGQLRSLMERVDEL 313
+NL I I+ P+T I+ E+ + E+E + F + A + L G+ R M++V E+
Sbjct: 531 KNLSIYFLSEIKGKPITEIVAPEVIKEAIEDEINIFASIAQACLRLRGEERPTMKQV-EI 589
Query: 312 NQEAIK 295
+ ++I+
Sbjct: 590 SLQSIR 595
>01_01_0573 +
4253484-4254653,4255526-4255735,4255842-4255937,
4256034-4256255,4256829-4257023,4257097-4257243,
4257323-4257472,4257762-4257892,4257978-4258194
Length = 845
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/102 (16%), Positives = 46/102 (45%)
Frame = -2
Query: 357 LEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQENAARAAKDETPLPE 178
+E + + M+R ++Q A N ++ + + ++ Q+ + ++ E L E
Sbjct: 685 IEARYKEWMDRGPSIDQLAYCINSFRDAALSKDPKFDHIEMEEKQKVINQCSEAEVWLRE 744
Query: 177 EDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAK 52
K+ + +P NP++++ + ++ + +FC + K
Sbjct: 745 ----KIQQQDALPKHANPVLLSSDLKKKAETVDRFCKPIMMK 782
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,430
Number of Sequences: 37544
Number of extensions: 342517
Number of successful extensions: 892
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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