Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c23
         (637 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    28   0.22 
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          23   8.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.1  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   8.1  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = -2

Query: 429  ISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFN---RYQQLVVRQQ 259
            +   TE I E   SK        VL+ ++  L +++D+L+    K     +  +  V++ 
Sbjct: 880  VDRYTEQINEITNSK------VKVLQTKINGLGKQIDKLSANISKLTVEIKTSERNVQKS 933

Query: 258  QDKHRWMVKR--AQENAARAAKDETPLPEEDVNKL 160
            +DK   M     A ++A R   DE    EE+ NKL
Sbjct: 934  KDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKL 968



 Score = 23.0 bits (47), Expect = 8.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 345 LRSLMERVDELNQEAIKFNRYQQLVVRQQQD 253
           L  + ERVD LN+E  + +   +L  R+ +D
Sbjct: 255 LLKINERVDALNEERTEKHNRCKLAEREMKD 285


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 510 RNLKIGYENLFIEVPIVIRNSP 445
           + L+I   N+  E+P VI+N P
Sbjct: 516 KRLRISSGNVSSEIPTVIQNDP 537


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 237  VKRAQENAARAAKDETPLPEED 172
            V+  QEN  R  ++E  LP+ED
Sbjct: 2089 VRIQQENGHRITEEEYYLPDED 2110


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.0 bits (47), Expect = 8.1
 Identities = 14/85 (16%), Positives = 36/85 (42%)
 Frame = -2

Query: 462 VIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRY 283
           V+R  P       +  +   +++G +++        + Q R   ++  +  Q+  +  RY
Sbjct: 238 VVRGRPSQRHRQPQQQQQQQQQQGERYVPPQLRQQRQQQQRPRQQQQQQQQQQQQQGERY 297

Query: 282 QQLVVRQQQDKHRWMVKRAQENAAR 208
               +RQQ+ + +   ++ Q+   R
Sbjct: 298 VPPQLRQQRQQQQHQQQQQQQQQQR 322


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 623,876
Number of Sequences: 2352
Number of extensions: 12883
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62305095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)