Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c23
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic in... 99 2e-21
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 30 1.6
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid deplete... 28 6.4
Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 27 8.5
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 27 8.5
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 27 8.5
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 27 8.5
>AF003740-3|AAC48137.2| 365|Caenorhabditis elegans Eukaryotic
initiation factor protein3.H protein.
Length = 365
Score = 99.1 bits (236), Expect = 2e-21
Identities = 58/215 (26%), Positives = 118/215 (54%), Gaps = 7/215 (3%)
Frame = -2
Query: 636 ESVVVILRYKEISQRILDLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVI 457
E+VV+I + Q L L+A+RL+ A+ + + D+ PE ++ + Y+N+F E+PI+I
Sbjct: 139 ENVVLIYDPIKTRQGQLSLRAWRLSTAALDLASKNDWRPELVKAAGLTYQNMFEELPIII 198
Query: 456 RNSPLTNIMISELT---EMIPEEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNR 286
++S L N+++SEL+ ++ ++ DLG+ LE +R++M VDELN+ +
Sbjct: 199 KSSYLNNVLMSELSLAKSCSSDKYSTRHFDLGSKKSLEKSVRAMMANVDELNKSIQSLTK 258
Query: 285 YQQLVVRQQQDKHRWMV--KRAQENAARAAKDETPLPEEDVNKLFKPHPVPPR--LNPMI 118
Y + +Q+ D + + KR QEN +R A+ + +P +D+ ++ P L+ ++
Sbjct: 259 Y--TIDKQRHDNMVFSLTQKRQQENESRVARGDPTIPMDDIKRIKAPQLQTRNGLLDELL 316
Query: 117 VAGQIDTYSQHISQFCSQSLAKLYLTQALQNAKEA 13
+ + + S+++ K+++ +A+ K A
Sbjct: 317 ASFDTNALADFSKTVTSENITKMFIAEAVAEEKVA 351
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = -2
Query: 468 PIVIRNSPLTNIMISELTEMIP----EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEA 301
P++ R + +++ ++ IP +E S FL GT V+E + + R D A
Sbjct: 16 PVIQRKTRDSDLCLTSDIPKIPPNCIDELNSHFLGKGTFGVVE-KTKYRKTRDDTYRPAA 74
Query: 300 IKFNRYQQLVVRQQQDKHRWMVK 232
IK+ L + +++ KH W ++
Sbjct: 75 IKYASATHLSILKREAKHMWNLR 97
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -2
Query: 411 MIPEEEGSKFLDLGTASVLEGQLRSLMERVDELN-----QEAIKFNRYQQLVVRQQQDKH 247
M P EE F+ S+ E + ++L E+ +EL + K QQL QQ+
Sbjct: 1 MSPNEENCFFI-----SLFEAEKKALAEKCEELTLKFEQADKEKNEMVQQLSRLQQEMLE 55
Query: 246 RWMVKRAQENAARAAKDETPLPEEDVNK 163
+ +A+ N A+A ++E +DV +
Sbjct: 56 KCDALQAEVNEAKALREEIQAKYDDVTQ 83
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = -2
Query: 411 MIPEEEGSKFLDLGTASVLEGQLRSLMERVDELN-----QEAIKFNRYQQLVVRQQQDKH 247
M P EE F+ S+ E + ++L E+ +EL + K QQL QQ+
Sbjct: 1 MSPNEENCFFI-----SLFEAEKKALAEKCEELTLKFEQADKEKNEMVQQLSRLQQEMLE 55
Query: 246 RWMVKRAQENAARAAKDETPLPEEDVNK 163
+ +A+ N A+A ++E +DV +
Sbjct: 56 KCDALQAEVNEAKALREEIQAKYDDVTQ 83
>AF043700-5|AAB97575.2| 573|Caenorhabditis elegans Lipid depleted
protein 6 protein.
Length = 573
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 273 VVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFKPHPV 142
+V++QQD VK +ENAAR T EE N+ K +
Sbjct: 372 IVKEQQDAEEAEVKAIRENAARKQAAATGQVEEVENQKEKDREI 415
>Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical
protein C05G5.2 protein.
Length = 685
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -2
Query: 180 EEDVNKLFKPHPVPPRLNPMIVAGQIDTYSQHISQFCSQSLAKLYLTQALQNAKEAKQNN 1
EE V P P PP+ +P A +D Q+ Q Q + K + QN +++
Sbjct: 197 EEPVTLAAPPQPKPPKPSPSTTAILVDQVGQNGIQHSPQDVPKEVASITSQNENSLAEHH 256
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = -2
Query: 402 EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQ 223
++E SK L G EG+++++ E++ + E K ++ ++ V + + W+ +
Sbjct: 977 DKEASKALVKGAVDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEK 1036
Query: 222 ENAARAAKD 196
E + +K+
Sbjct: 1037 EEILKMSKE 1045
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = -2
Query: 402 EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQ 223
++E SK L G EG+++++ E++ + E K ++ ++ V + + W+ +
Sbjct: 735 DKEASKALVKGAVDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEK 794
Query: 222 ENAARAAKD 196
E + +K+
Sbjct: 795 EEILKMSKE 803
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/69 (20%), Positives = 35/69 (50%)
Frame = -2
Query: 402 EEEGSKFLDLGTASVLEGQLRSLMERVDELNQEAIKFNRYQQLVVRQQQDKHRWMVKRAQ 223
++E SK L G EG+++++ E++ + E K ++ ++ V + + W+ +
Sbjct: 977 DKEASKALVKGAVDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKIEKHLSWLQAEEK 1036
Query: 222 ENAARAAKD 196
E + +K+
Sbjct: 1037 EEILKMSKE 1045
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,916,108
Number of Sequences: 27780
Number of extensions: 290585
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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