Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c23
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.15 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.27 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    24   1.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 289 IELDRFLIQFINTFHETAKLSFENRCSTQ 375
           IEL R  I F +T H T KL+F+NR  TQ
Sbjct: 162 IELVREEILF-DTVHVTFKLTFDNRAFTQ 189


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 273 VVRQQQDKHRWMVKRAQENAARAAKDETPLPEEDVNKLFKPHPV 142
           VV+    KH+++ K+ ++        + PLP E  ++L K HP+
Sbjct: 106 VVKYLGGKHKFISKKIKKTMENKDITKRPLPNE--SQLIKRHPI 147


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 290 LNLIAS*FSSSTRSMRLRSCPSRTDAVPRSKNLD 391
           LN+I+S    S       S P R  +VP +  LD
Sbjct: 71  LNIISSDHDDSDEEYAANSQPPRITSVPNTSRLD 104


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 517 FRSVIAFLVHSNSLRCQTIGLQVK 588
           ++ +   L+  N L  QTIG Q+K
Sbjct: 259 YKKIQQILIRMNKLCIQTIGGQIK 282


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 489  ENLFIEVPIVIRNSPLTNIMISELTEMIPEEEGSKFLDLGTASVLEGQLRSLMERVDE 316
            +N F ++ I I+    T +  S +TE    E+G ++  L T      +L+  +  ++E
Sbjct: 830  QNKFKDI-IKIKTIGSTYMAASGITESAESEDGPRWGHLSTLVEFALELKKALSSINE 886


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,590
Number of Sequences: 438
Number of extensions: 3519
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)