Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c21
(646 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-301|AAX52653.1| 386|Drosophila melanogaster CG31931-PA... 32 0.77
AE014296-1323|AAN12020.1| 294|Drosophila melanogaster CG32371-P... 31 1.3
S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase... 31 1.8
AY070709-1|AAL48180.1| 652|Drosophila melanogaster SD02261p pro... 31 1.8
AE014296-3203|AAF49118.1| 652|Drosophila melanogaster CG8743-PA... 31 1.8
BT014672-1|AAT27296.1| 294|Drosophila melanogaster AT13084p pro... 30 2.3
D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase... 28 9.4
AY070529-1|AAL48000.1| 746|Drosophila melanogaster GM13460p pro... 28 9.4
AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA... 28 9.4
AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymera... 28 9.4
>AE014134-301|AAX52653.1| 386|Drosophila melanogaster CG31931-PA
protein.
Length = 386
Score = 31.9 bits (69), Expect = 0.77
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 94 FVPSLLSDVWNVWLLIVACSVTSAACQ*TA 183
F SLL ++W+ WL I AC +T A TA
Sbjct: 288 FPNSLLINIWDFWLCIAACDLTEKAGDETA 317
>AE014296-1323|AAN12020.1| 294|Drosophila melanogaster CG32371-PA
protein.
Length = 294
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 221 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEGT-KRFRRLPSFGFRLLQNR 45
+A+ DLA TE VH + TE A+ ++ T SEG+ + R + R+ Q R
Sbjct: 199 SAQTDLAITEPENQVHESQTKTTEKASAQTEKATTEPDSEGSIEELRNYCKYVSRMKQER 258
>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
polymerase-primase 180 kdasubunit protein.
Length = 1490
Score = 30.7 bits (66), Expect = 1.8
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 512 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 420
NI DY+ ++K+ NI++ NK L Q+EL+I
Sbjct: 1023 NITDYDQVYKIGHNIKQSVNK-LYKQEELDI 1052
>AY070709-1|AAL48180.1| 652|Drosophila melanogaster SD02261p
protein.
Length = 652
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 96 RSFATVG-CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 212
RS AT C+ L +F F LS +W++ C++Y
Sbjct: 510 RSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549
>AE014296-3203|AAF49118.1| 652|Drosophila melanogaster CG8743-PA
protein.
Length = 652
Score = 30.7 bits (66), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 96 RSFATVG-CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 212
RS AT C+ L +F F LS +W++ C++Y
Sbjct: 510 RSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549
>BT014672-1|AAT27296.1| 294|Drosophila melanogaster AT13084p
protein.
Length = 294
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -3
Query: 221 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEGT-KRFRRLPSFGFRLLQNR 45
+A+ D+A TE VH + TE A+ ++ T SEG+ + R + R+ Q R
Sbjct: 199 SAQTDMAITEPENQVHESQTKTTEKASAQTEKATTEPDSEGSIEELRNYCKYVSRMKQER 258
>D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase
alpha protein.
Length = 1505
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 512 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 420
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 1020 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 1049
>AY070529-1|AAL48000.1| 746|Drosophila melanogaster GM13460p
protein.
Length = 746
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 512 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 420
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 279 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 308
>AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA
protein.
Length = 1488
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 512 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 420
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 1021 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 1050
>AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymerase
alpha 180K subunit protein.
Length = 1415
Score = 28.3 bits (60), Expect = 9.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 512 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 420
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 1020 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 1049
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,794,205
Number of Sequences: 53049
Number of extensions: 586856
Number of successful extensions: 1814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2724262200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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