Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c14
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   247   6e-66
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   239   9e-64
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   2.1  
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   4.9  
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536...    27   8.5  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  247 bits (604), Expect = 6e-66
 Identities = 116/181 (64%), Positives = 136/181 (75%)
 Frame = -2

Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
           +DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ 
Sbjct: 214 KDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQN 273

Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
           GYHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V  D++M
Sbjct: 274 GYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLM 327

Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 54
           IKGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K  F G L
Sbjct: 328 IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKL 387

Query: 53  K 51
           K
Sbjct: 388 K 388


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  239 bits (586), Expect = 9e-64
 Identities = 112/173 (64%), Positives = 132/173 (76%)
 Frame = -2

Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
           +DEMID I            +RW   +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ 
Sbjct: 214 KDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQN 273

Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
           GYHHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V  D++M
Sbjct: 274 GYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLM 327

Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 75
           IKGCC+GPKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 328 IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 308  DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 213
            D +  + +P+GG P YG ++ D  +   C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
 Frame = -2

Query: 452 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 303
           ++V F    +   GY H + +N ++  I  G          IH+ D   +      E  L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419

Query: 302 SEKSITPMGGFPHYGEVNN 246
           SEKS  P+  FP    V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438


>12_02_1033 -
           25552157-25552732,25553050-25553505,25553608-25553659,
           25553758-25553831,25553968-25554017,25554106-25554187,
           25554265-25554314,25554405-25554447,25554544-25554624,
           25554723-25554768,25554860-25554906,25554998-25555063,
           25555334-25555400,25555528-25555613
          Length = 591

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 115 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQR 5
           PS V+  +RRR+ R +S  + R + F+K    P P+R
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPER 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,670
Number of Sequences: 37544
Number of extensions: 366194
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)