Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c14
(594 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 272 2e-73
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 272 2e-73
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 272 2e-73
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 272 2e-73
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 272 2e-73
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 272 2e-73
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 266 8e-72
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 266 8e-72
U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41543-8|AAB37025.2| 393|Caenorhabditis elegans Hypothetical pr... 27 7.6
U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical pr... 27 7.6
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 272 bits (666), Expect = 2e-73
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = -2
Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
QDEMID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQK
Sbjct: 213 QDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQK 272
Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
G+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M
Sbjct: 273 GFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIM 329
Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 54
++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG L
Sbjct: 330 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 389
Query: 53 KKDRIRE 33
K+D + E
Sbjct: 390 KRDFLAE 396
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 272 bits (666), Expect = 2e-73
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = -2
Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
QDEMID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQK
Sbjct: 213 QDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQK 272
Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
G+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M
Sbjct: 273 GFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIM 329
Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 54
++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG L
Sbjct: 330 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 389
Query: 53 KKDRIRE 33
K+D + E
Sbjct: 390 KRDFLAE 396
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 272 bits (666), Expect = 2e-73
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = -2
Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
QDEMID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQK
Sbjct: 115 QDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQK 174
Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
G+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M
Sbjct: 175 GFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIM 231
Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 54
++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG L
Sbjct: 232 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 291
Query: 53 KKDRIRE 33
K+D + E
Sbjct: 292 KRDFLAE 298
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 272 bits (666), Expect = 2e-73
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = -2
Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
QDEMID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQK
Sbjct: 213 QDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQK 272
Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
G+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M
Sbjct: 273 GFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIM 329
Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 54
++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG L
Sbjct: 330 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 389
Query: 53 KKDRIRE 33
K+D + E
Sbjct: 390 KRDFLAE 396
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 272 bits (666), Expect = 2e-73
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = -2
Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
QDEMID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQK
Sbjct: 115 QDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQK 174
Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
G+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M
Sbjct: 175 GFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIM 231
Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 54
++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG L
Sbjct: 232 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 291
Query: 53 KKDRIRE 33
K+D + E
Sbjct: 292 KRDFLAE 298
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 272 bits (666), Expect = 2e-73
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = -2
Query: 593 QDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 414
QDEMID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQK
Sbjct: 213 QDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQK 272
Query: 413 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVM 234
G+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M
Sbjct: 273 GFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIM 329
Query: 233 IKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTL 54
++G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG L
Sbjct: 330 LRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKL 389
Query: 53 KKDRIRE 33
K+D + E
Sbjct: 390 KRDFLAE 396
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 266 bits (652), Expect = 8e-72
Identities = 126/185 (68%), Positives = 147/185 (79%)
Frame = -2
Query: 587 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 408
+MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+
Sbjct: 167 QMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 226
Query: 407 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 228
HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M++
Sbjct: 227 HHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLR 283
Query: 227 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 48
G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+
Sbjct: 284 GAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKR 343
Query: 47 DRIRE 33
D + E
Sbjct: 344 DFLAE 348
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 266 bits (652), Expect = 8e-72
Identities = 126/185 (68%), Positives = 147/185 (79%)
Frame = -2
Query: 587 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 408
+MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSRV+FTVARAGQKG+
Sbjct: 167 QMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARAGQKGF 226
Query: 407 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 228
HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP YG VN D++M++
Sbjct: 227 HHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLR 283
Query: 227 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 48
G +GPKKR+ITLRKSL TKR A EKINLK+IDTSSK GHGRFQT A+K AFMG LK+
Sbjct: 284 GAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKR 343
Query: 47 DRIRE 33
D + E
Sbjct: 344 DFLAE 348
>U13875-9|AAA21160.3| 403|Caenorhabditis elegans Hypothetical
protein C26E6.6 protein.
Length = 403
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 530 RWHTKKLP-RKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRI 369
RW + P R+T K R++ +G+ +R+ G GY RT +I RI
Sbjct: 241 RWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHMGYEWRTVSGLEIVRI 295
>U41543-8|AAB37025.2| 393|Caenorhabditis elegans Hypothetical
protein F46H5.8 protein.
Length = 393
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 136 SNSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 20
SN L P PS++ + + L HS V +++I+ RL
Sbjct: 266 SNRLLPMPSNMGISNAEGLAHFHSLVANKQILSENMYRL 304
>U41110-4|AAA82419.1| 575|Caenorhabditis elegans Hypothetical
protein ZK682.5 protein.
Length = 575
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 136 SNSLTPRPSSVMVDSRRRLTRLHSWVHS 53
+NSLT PSS +V+ R LT L+ ++S
Sbjct: 195 TNSLTSIPSSALVNQRNTLTNLNLGLNS 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,261,529
Number of Sequences: 27780
Number of extensions: 312518
Number of successful extensions: 809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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