Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c13
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   1.4  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    26   3.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   4.3  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.3  
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    25   5.7  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   7.5  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   9.9  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.9  

>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 336 FRQHDETSSQPKLAFRRQKLEIQCAV 413
           F+ HDE ++ P L +R+ K  I C +
Sbjct: 47  FQCHDELNTHPFLPWRKAKFHIPCVI 72


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 215 CNCRTIKLNGMRSSKKIKRQ 156
           C C T+K NG+++ +KI RQ
Sbjct: 127 CMCCTVKDNGIKALEKIMRQ 146


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 412 FLLCFIIHDCRWQIAKHKAFIAHVEIKTSVFEFQR 516
           FL+  I    +W   +HKAF+    I+++ FE  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
 Frame = +3

Query: 39  VGLN*RS*HPQMHNFIXPPCCK*CVFLNLCKIAHKTPTRLAFYFLARAHAV*FYRTAIAQ 218
           VG+N +S   +    +    CK  +  N     H   ++LA  F+  A    +Y T   +
Sbjct: 81  VGMNWKSFSNKEKESVTSFLCKISLEDNNLLSVHFVRSKLASVFIEIAKRD-WYNTWREE 139

Query: 219 --SRKQTCWVAIFQHGRRSAPLCVPTAETLLEFPSPVAAIR 335
             S  Q+ W    QH + S+ +     E L ++  PVA++R
Sbjct: 140 FDSFLQSLWSLSLQHRQLSSLILRGIMEDLYQYDDPVASLR 180


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
 Frame = +1

Query: 424 FIIHDCRWQIAK------HKAFIAHVEIKTSVFEFQ 513
           F+I  C W I +         FI H  +   VFEFQ
Sbjct: 182 FLITSCNWTIQELEERFTKNGFIVHSTVPVPVFEFQ 217


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 63  VRTFNSTQHNILQLNKNYY 7
           +R  +S +H ILQ+NKN Y
Sbjct: 188 IRIRSSYEHLILQINKNIY 206


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 342 GENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPN 235
           G++E LLPV   ++ +    H K P+GV     RP+
Sbjct: 58  GQSE-LLPVESTEDITIPRKHTKAPSGVPSRIFRPH 92


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 297 SRLSGHIKVPNGVRVEKLR 241
           S+  G IKVP GVRV  +R
Sbjct: 602 SKALGSIKVPEGVRVNIMR 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,736
Number of Sequences: 5004
Number of extensions: 49500
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)