Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c13
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0089 - 27619053-27620138 30 1.1
12_02_0235 + 16079042-16079410 29 1.9
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515... 29 1.9
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 3.3
01_06_0078 + 26223797-26223803,26224000-26224278,26224391-262246... 29 3.3
05_04_0045 - 17477470-17477570,17477753-17477774,17477942-174780... 28 4.4
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 28 5.8
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 27 7.6
03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355... 27 7.6
01_01_0601 - 4476261-4476728 27 7.6
>05_07_0089 - 27619053-27620138
Length = 361
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 379 KASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERRPC 254
+A F C S+C ++ T N+ V+ +G KG PC
Sbjct: 24 RALFSCGIFSTCTHPALSPTATPNNNVVAGMGGAKGGSGTPC 65
>12_02_0235 + 16079042-16079410
Length = 122
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 385 RRKASFGCDDVSSCWRKRMAATGDGNSRSVSAVGTHKGAERR 260
+RKA G D + MAA +G S V +G H+ AERR
Sbjct: 40 QRKAGTGGDGSE---KTMMAARAEGGSNWVEVIGCHEKAERR 78
>02_01_0690 -
5152224-5152386,5152490-5152687,5152815-5153014,
5153122-5153223,5153414-5153550,5153688-5153798,
5156092-5156344,5157954-5158052,5158449-5158739
Length = 517
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 306 EFPSPVAAIRFRQHDETSSQPKLAFRRQKLEIQCAVFALFH 428
E PS A RF+QH S P FR+ +EI+ ++ H
Sbjct: 301 ELPSTFKAFRFQQH-RWSCGPANLFRKMLMEIKVTIWKKIH 340
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 300 ASRLSGHIKVPNGVRVEKLRPNMSVYGTVQLPYDKI 193
AS + G K ++ + L+PN+ VYGT+ Y K+
Sbjct: 400 ASDMDGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKL 435
>01_06_0078 +
26223797-26223803,26224000-26224278,26224391-26224609,
26226846-26226917,26228073-26228221,26228859-26229135,
26230922-26231187
Length = 422
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -3
Query: 399 SPIFAGEKLVSVVTTFHRVGENEWLLPVTGIQEASRLSGHIKVPNGVRVEKLRPNMSVYG 220
SP F E+ V V T H E W + G+ L+GH N + PN +++G
Sbjct: 131 SPDFYRERGVHVRDTVHLDMEMNWFRDLLGLLCPDDLAGHNLFEN--EENFINPNRTIHG 188
Query: 219 T 217
T
Sbjct: 189 T 189
>05_04_0045 -
17477470-17477570,17477753-17477774,17477942-17478017,
17478288-17478397,17478674-17478743,17478847-17479178
Length = 236
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 379 KASFG-CDDVSSCWRKRMAATGDGNSRSVSAVG 284
KAS+ DD S W R+AA + +S S SA G
Sbjct: 66 KASWSVADDEESRWLDRLAADAESSSSSASAAG 98
>03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 413 FCFVSLFTIAAGKLPNTKRLLHTWKLKQVFSSFNGSKLPSSLKTL 547
FC T + K P+ +HTWKLK FS K S LK L
Sbjct: 1072 FCSNGSITNSQSKQPDEIYTVHTWKLKW-FSEETVVKFISLLKAL 1115
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 27.5 bits (58), Expect = 7.6
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = -3
Query: 243 RPNMSVYGTVQLPYDKIKRHALEQENKTPNALESCVLFYKDSEIRITYNRGXL*NYAFED 64
R N YG +D + A EQ N P A+ V K + T N AF
Sbjct: 170 RSNPGFYGRPS-NHDSVFHKAFEQLN--PRAILVAVDPVKSATGNFTMN-------AFRS 219
Query: 63 VRTFNSTQHNILQLNKNYY 7
V +++ T N+ LN+ YY
Sbjct: 220 VTSYHETSSNVGALNREYY 238
>03_06_0354 -
33333634-33333840,33334106-33334213,33335384-33335557,
33335637-33335765,33335858-33336145,33336257-33336489,
33336607-33337435
Length = 655
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 130 LQRFRNTHHLQQGGXMKLCI*GCQD 56
++RF NT H+Q +K C GC D
Sbjct: 600 VERFNNTRHVQYVHSIKFCQFGCID 624
>01_01_0601 - 4476261-4476728
Length = 155
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 334 RMAATGDGNSRSVSAVGTHKGAERR 260
R AA G+G S G H+GA RR
Sbjct: 66 REAARGNGGSEGEGGGGAHRGARRR 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,147,661
Number of Sequences: 37544
Number of extensions: 317860
Number of successful extensions: 901
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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