Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c10
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.76 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   1.3  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   2.3  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   3.1  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    26   4.1  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   7.1  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   7.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   7.1  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   9.4  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 302 CHIWFDTPAPFFSRYHTQTQ 243
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 206 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 120
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 508 LNVE-LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL 639
           LNV  L +GH   FHG V    GRI++  T     Y  E+ V ++
Sbjct: 268 LNVNRLVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAVLRI 312


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 639 EFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFN--IEDYNNIFKVME 478
           EFLN  +     +P+SRM  N   +     +E +    CK N   ED++ I  + E
Sbjct: 87  EFLNGFVSRFPNHPISRM--NKIQSKMLEMLEEWNYMLCKNNRHREDFSRIHDIRE 140


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 639  EFLNRLLKHIDPYPLSRMYYNAANTM 562
            E  N L   ID  PLSR Y+NA  T+
Sbjct: 1208 ELENNLALAIDRLPLSRNYFNAGLTL 1233


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 510 EDYNNIFKVMENIRKHSNKNLNDQD 436
           ED  N+ K   ++RKH  +N  D+D
Sbjct: 86  EDLYNLIKKAVSVRKHLERNRKDKD 110


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 354 LCSCSFYLINIFYALHSTIELPNICLTRLGRLNFCCCVS*YFPS 485
           L +CS   I++ Y L+    LP I  +    LNF   ++ YF S
Sbjct: 120 LSTCSPLWISVIYLLNPLTFLPGIACSADMILNFTTLMTIYFAS 163


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 206 HIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK-ERSDFVACP 78
           H QK + P     P++QNT      H THP   +   SDF + P
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHPPKQQGPISDFRSIP 316


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 60  TVESQTRAGDEIASFLRYC 116
           T+E   +AG +I SFL YC
Sbjct: 136 TIEEVHKAGGKIKSFLSYC 154


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 103 NEAISSPALVWLSTVTKSCLQDFKLSPLSSNSL 5
           NE ++SP     +++T S L+DF+ SP  S  L
Sbjct: 164 NEQVASPLSKKAASLTSSPLKDFQSSPPLSTVL 196


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 555 TTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNK 454
           +++E   ++  K  IED  N  K +E IRK S +
Sbjct: 67  SSLEENKLTKLKAPIEDMENTKKELEEIRKQSTE 100


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 576 AANTMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLND 442
           AA T    + ++YA S       D     KV  + +KH +KN+ D
Sbjct: 93  AAPTQLVRSCDDYANSASTLVTNDDGTKTKVDSDEKKHKHKNVRD 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,203
Number of Sequences: 5004
Number of extensions: 51531
Number of successful extensions: 177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)