Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c08
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa... 85 7e-18
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 31 0.12
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 27 2.0
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 26 3.5
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 3.5
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 4.6
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 4.6
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 8.0
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 8.0
>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 84.6 bits (200), Expect = 7e-18
Identities = 54/132 (40%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Frame = -2
Query: 425 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 249
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 248 DRKGFTVVYKKAKATRKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRR 75
R + K +KPAK L R+ A A R YK + + YR DL K ++ R
Sbjct: 61 PRGVVLITKTNPKNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVAR 119
Query: 74 ASAILRSQRPIK 39
ASAIL SQRP K
Sbjct: 120 ASAILSSQRPKK 131
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 30.7 bits (66), Expect = 0.12
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 222 VHYCESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 368
+HYC S + LHDT LV G + S +++ + D L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 446 PNTTCSQCVRRQK 484
PNTTC QC+ R+K
Sbjct: 264 PNTTCPQCMARRK 276
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 361 FFTRNALLLRMIIQFSDDDIFTV*TYFYTKHNVLTMC 471
FFT ++L + S I Y Y HN+LT+C
Sbjct: 449 FFTVSSLFFTRFVNESLIPILRNDYYVYLSHNLLTVC 485
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 3.5
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -2
Query: 386 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRKGFTVVYKKAK 210
NN ++L+KK+ K P+ V + NG+ K A V P RK + +
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGR 243
Query: 209 ATRKPAKNL 183
+ NL
Sbjct: 244 CNKAEDCNL 252
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 114 PLPHRPMQGYPSSCFSHPPLPEAHQSKKG*DQP 16
P P+ P GYP + +P P + ++ QP
Sbjct: 100 PQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 413 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 306
S ++ + + NNN ++V + +I+ P+S + LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 265 PTAFL*IKPLYLKEWRLVTLFGSLLN 342
PT+F IKPL + +R+ L+ LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372
>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 282 SQESRWCRGEP*QEGIHSSVQESKGY 205
S +S W +P + IHSSVQE++G+
Sbjct: 2 SNKSAW---QPQFDEIHSSVQEAEGF 24
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,505
Number of Sequences: 5004
Number of extensions: 40211
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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