Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c08
(486 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 87 7e-18
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 86 1e-17
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 85 3e-17
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.0
09_02_0336 - 7397745-7398308,7398813-7400723 29 2.6
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 2.6
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 6.0
07_03_1758 + 29269634-29270638 27 6.0
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 27 6.0
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 8.0
05_01_0142 - 940421-940701,941262-941574 27 8.0
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 87.0 bits (206), Expect = 7e-18
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Frame = -2
Query: 407 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67
Query: 236 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 60
V+ K K PAK + + R+ VK + N+YR DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 59 RSQRPIKAKKAKTSRNPSR 3
RS + K+ K +R P++
Sbjct: 128 RSLQVAKSGVKKKNRQPAK 146
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 86.2 bits (204), Expect = 1e-17
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Frame = -2
Query: 407 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDA 67
Query: 236 FTVV-YKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 60
V+ K K PAK + + R+ VK + N+YR DL K L R S++
Sbjct: 68 AVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVY 127
Query: 59 RSQRPIKAKKAKTSRNPSR 3
RS + K+ K +R P++
Sbjct: 128 RSLQVSKSGAKKKNRQPTK 146
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 85.0 bits (201), Expect = 3e-17
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Frame = -2
Query: 410 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 240
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V+ K
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGK 65
Query: 239 GFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 66
VV K + KPA + + R+ VK + N+YR DL K L R SA
Sbjct: 66 ETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSA 125
Query: 65 ILRSQRPIKAKKAKTSR 15
+ RS + K+ K +R
Sbjct: 126 VYRSLQVAKSGVKKKNR 142
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -2
Query: 428 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 297
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -1
Query: 423 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 322
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 309 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 419
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 386 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>07_03_1758 + 29269634-29270638
Length = 334
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 134 KRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKA 27
+ L A+ + D+C RRAS ++R+ R + A+ A
Sbjct: 152 RHLPAASFHNYDICADANRRASRLVRADRDLSARMA 187
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 94 ARLPFVVLQPSSAPRGPSKQKRLRPAATQVG 2
AR P LQP+ AP P + +PA T G
Sbjct: 5 ARFPHPALQPAPAPAPPPPNLKPKPAPTTRG 35
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 47 ASGSGGWLKHDEG*PCIGLCGSG*P 121
A GSGGW + +G CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -1
Query: 108 PHR--PMQGYPSSCFSHPPLPEAHQSKKG*DQPQP 10
PH+ P QGYP ++PP P A+ G P P
Sbjct: 31 PHQGYPPQGYPPPPGAYPPPPGAYPPPPGAYPPPP 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,202
Number of Sequences: 37544
Number of extensions: 295824
Number of successful extensions: 791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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