Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c08
(486 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY102656-1|AAM27485.1| 236|Drosophila melanogaster GH04183p pro... 175 4e-44
AY071444-1|AAL49066.1| 144|Drosophila melanogaster RE52852p pro... 175 4e-44
AE014296-606|AAN11547.1| 144|Drosophila melanogaster CG12740-PD... 175 4e-44
AE014296-605|AAF47742.1| 144|Drosophila melanogaster CG12740-PB... 175 4e-44
AE014296-604|AAN11546.1| 144|Drosophila melanogaster CG12740-PA... 175 4e-44
AE014296-607|AAF47743.1| 165|Drosophila melanogaster CG12740-PC... 146 1e-35
AY071463-1|AAL49085.1| 146|Drosophila melanogaster RE54375p pro... 29 2.6
AE014296-2259|AAF49831.1| 146|Drosophila melanogaster CG14112-P... 29 2.6
AE014298-2404|AAF48609.1| 511|Drosophila melanogaster CG9968-PB... 29 4.5
AY070613-1|AAL48084.1| 995|Drosophila melanogaster RE71565p pro... 28 5.9
AE013599-2173|AAF58067.2| 995|Drosophila melanogaster CG8414-PA... 28 5.9
>AY102656-1|AAM27485.1| 236|Drosophila melanogaster GH04183p
protein.
Length = 236
Score = 175 bits (425), Expect = 4e-44
Identities = 82/136 (60%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = -2
Query: 416 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 96 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 155
Query: 236 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 57
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA+LR
Sbjct: 156 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 215
Query: 56 SQR--PIKAKKAKTSR 15
SQ+ P+K KKA+ ++
Sbjct: 216 SQKPAPVKGKKAEFAK 231
>AY071444-1|AAL49066.1| 144|Drosophila melanogaster RE52852p
protein.
Length = 144
Score = 175 bits (425), Expect = 4e-44
Identities = 82/136 (60%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = -2
Query: 416 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 236 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 57
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA+LR
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 56 SQR--PIKAKKAKTSR 15
SQ+ P+K KKA+ ++
Sbjct: 124 SQKPAPVKGKKAEFAK 139
>AE014296-606|AAN11547.1| 144|Drosophila melanogaster CG12740-PD,
isoform D protein.
Length = 144
Score = 175 bits (425), Expect = 4e-44
Identities = 82/136 (60%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = -2
Query: 416 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 236 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 57
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA+LR
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 56 SQR--PIKAKKAKTSR 15
SQ+ P+K KKA+ ++
Sbjct: 124 SQKPAPVKGKKAEFAK 139
>AE014296-605|AAF47742.1| 144|Drosophila melanogaster CG12740-PB,
isoform B protein.
Length = 144
Score = 175 bits (425), Expect = 4e-44
Identities = 82/136 (60%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = -2
Query: 416 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 236 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 57
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA+LR
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 56 SQR--PIKAKKAKTSR 15
SQ+ P+K KKA+ ++
Sbjct: 124 SQKPAPVKGKKAEFAK 139
>AE014296-604|AAN11546.1| 144|Drosophila melanogaster CG12740-PA,
isoform A protein.
Length = 144
Score = 175 bits (425), Expect = 4e-44
Identities = 82/136 (60%), Positives = 107/136 (78%), Gaps = 2/136 (1%)
Frame = -2
Query: 416 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 236 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILR 57
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA+LR
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLR 123
Query: 56 SQR--PIKAKKAKTSR 15
SQ+ P+K KKA+ ++
Sbjct: 124 SQKPAPVKGKKAEFAK 139
>AE014296-607|AAF47743.1| 165|Drosophila melanogaster CG12740-PC,
isoform C protein.
Length = 165
Score = 146 bits (355), Expect = 1e-35
Identities = 66/112 (58%), Positives = 86/112 (76%)
Frame = -2
Query: 416 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 237
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 236 FTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATL 81
FT V KK K ++PAKN +R FKAG RRSL K+K LL + YR DL + +
Sbjct: 64 FTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQVIM 115
>AY071463-1|AAL49085.1| 146|Drosophila melanogaster RE54375p
protein.
Length = 146
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 212 KATRKPAKNLIRRPFKAGARRSLYKVKRLLKANH--YRTDLCKATLRRASAILRSQRPIK 39
K + KP K P K +R+L K++R + Y+ L + LRRASA R K
Sbjct: 21 KHSDKPHKVKTHDPLKKQKKRALKKLRRKSATVNFPYQLFLYRQELRRASADFSYLRLSK 80
Query: 38 AKKAKTSR 15
AK TS+
Sbjct: 81 AKIVLTSQ 88
>AE014296-2259|AAF49831.1| 146|Drosophila melanogaster CG14112-PA
protein.
Length = 146
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 212 KATRKPAKNLIRRPFKAGARRSLYKVKRLLKANH--YRTDLCKATLRRASAILRSQRPIK 39
K + KP K P K +R+L K++R + Y+ L + LRRASA R K
Sbjct: 21 KHSDKPHKVKTHDPLKKQKKRALKKLRRKSATVNFPYQLFLYRQELRRASADFSYLRLSK 80
Query: 38 AKKAKTSR 15
AK TS+
Sbjct: 81 AKIVLTSQ 88
>AE014298-2404|AAF48609.1| 511|Drosophila melanogaster CG9968-PB,
isoform B protein.
Length = 511
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 141 QSEEVVKG*PLPHRPMQG-YPSSCFSHPPLPEAH 43
Q ++ G P P+ PM YPS+ S+PP P ++
Sbjct: 60 QHQQYPGGAPAPYPPMSAPYPSAAPSYPPYPTSN 93
>AY070613-1|AAL48084.1| 995|Drosophila melanogaster RE71565p
protein.
Length = 995
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = -2
Query: 365 KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAK 189
K K+P S NNV+N S + K +NP K V KK+ AT K AK
Sbjct: 74 KTAGAKRPLS---NNVSNPDSSPSQKRLKKDNTLPKKNPVNKSSNVAAKKSAATSKSAK 129
>AE013599-2173|AAF58067.2| 995|Drosophila melanogaster CG8414-PA
protein.
Length = 995
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/59 (35%), Positives = 26/59 (44%)
Frame = -2
Query: 365 KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAK 189
K K+P S NNV+N S + K +NP K V KK+ AT K AK
Sbjct: 74 KTAGAKRPLS---NNVSNPDSSPSQKRLKKDNTLPKKNPVNKSSNVAAKKSAATSKSAK 129
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,055,286
Number of Sequences: 53049
Number of extensions: 502274
Number of successful extensions: 1386
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1705394754
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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