Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c07
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 31 0.088
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.15
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 29 0.36
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 29 0.47
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.47
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 1.1
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 1.4
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 1.4
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 26 3.3
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 5.8
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 5.8
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 5.8
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 25 7.7
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 7.7
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 7.7
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 31.5 bits (68), Expect = 0.088
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Frame = -3
Query: 555 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELRLNELDAKLNMLQS 385
DL+ + E + +K L ++ ET KND N E +E + E KLN ++
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385
Query: 384 ----------AEKLKTAIVTES---KNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLG 244
A++LK + ++ES K G + F +++ + L ++ E+I IK
Sbjct: 386 LISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQEQIQSSIK-----D 439
Query: 243 QERHFRKRKMRFED 202
E FRK + E+
Sbjct: 440 MENVFRKNEYLMEE 453
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.15
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 465 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 307
+ND + F+ L LNE+++++N+L+ A A +T NG + I H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.36
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 229 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 333
K +LL + KS+ FD V+AF KYG+ F V R +
Sbjct: 2 KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 29.1 bits (62), Expect = 0.47
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGN--RFEQFELRLNELDAKLNMLQ 388
+ + + IE +L ++ +S F+ T+ + K++V F F+L+L L L++LQ
Sbjct: 576 ETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFSDFQLKLKTLQCVLDILQ 635
Query: 387 SAEKLKTAIVTESKNGTVT 331
S + + S+ G T
Sbjct: 636 SLSNWAESGLYLSRRGVST 654
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.47
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = -3
Query: 555 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 391
+L E+ +K ++ TNS+ V+ + N++ ++ ++ +L+LNE + K L
Sbjct: 559 NLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
Score = 28.3 bits (60), Expect = 0.82
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 510 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD-AKLNMLQSAEKLKTAIVTESKN 343
L NSEKF E+ K+ V N + NE+D + N+L + +T KN
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKN 416
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 394
D+ + ++ ++K KKL ++E+ H T K N +G F + ++ L +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267
Query: 393 LQ 388
+
Sbjct: 268 FE 269
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -3
Query: 156 AIQCINEKLYDKHYKIRKIAKRVI 85
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -3
Query: 534 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 355
+ L H+ L + H TFK++V N +EL +EL A + S+ + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408
Query: 354 ES 349
S
Sbjct: 409 GS 410
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSA 382
DD+ +ES + +++ +S+K + E +ND R E + + L A L + A
Sbjct: 377 DDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLAVDA 435
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.6 bits (56), Expect = 2.5
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -3
Query: 555 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 376
DL KI + K KLNT ++T + + ++ E R+ L+ +LNMLQ
Sbjct: 519 DLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLNMLQKL-S 573
Query: 375 LKTAIVTESK 346
++ AI + S+
Sbjct: 574 MQPAISSSSE 583
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 31 LQYFXYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFF 138
L F LF + T+HV F + F F+ +FF
Sbjct: 246 LAAFYRGLFPSLFGTLHVGIQFPLYEYFKSFLDDFF 281
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.4 bits (53), Expect = 5.8
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +1
Query: 352 FRYDGGFQFFGR---LQHVKFGVEFVQTQFKLLK--PVAHIVLERFVGDHKFFAVCIQ 510
+ YD FQ +Q+ ++ +Q FK PVA +LER+V K + CI+
Sbjct: 253 YYYDLAFQNVNNDSFVQNYGKALQHIQRAFKTRNNDPVASSILERYVYSKKNYEGCIK 310
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 183 DGVHPNPLLAIQCINEKLYD 124
D ++PN L ++ INEK +D
Sbjct: 5 DAINPNNLKILEVINEKCFD 24
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -3
Query: 393 LQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERID--DRIKLAF 253
+ +A LK+ I ESK P D+T+ Q +F + I R+ LA+
Sbjct: 41 VNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 477 HETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAI-VTESKNGTVTFPRDIT 313
HE F GN F Q +L L D + + +T+I V +S TF +D T
Sbjct: 367 HEDFIFHEGNHFRQLKLILEANDILHQLFLRGDWTETSIFVGDSIRVEATFDKDNT 422
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 415
+DLR KI + + V K+N E +T E K + + +Q L++ E
Sbjct: 606 EDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQLSLKVFE 650
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -1
Query: 284 NASTTASNSLLFWAKSDIFASEKCALKTT 198
+A T AS S W K FAS KC T
Sbjct: 663 SAVTKASTSYKVWKKKLNFASRKCVKSFT 691
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,093
Number of Sequences: 5004
Number of extensions: 47050
Number of successful extensions: 166
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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