Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c07
(563 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 33 0.16
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 31 0.63
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 29 1.9
03_02_0227 + 6576333-6577769 29 2.6
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 28 4.5
02_01_0731 - 5471795-5471811,5471953-5472035,5472235-5472331,547... 28 4.5
12_01_0121 - 920988-921296,921556-921620,921874-921923,922009-92... 28 5.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 5.9
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 28 5.9
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 28 5.9
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 28 5.9
06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676 28 5.9
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690... 28 5.9
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 27 7.8
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = -3
Query: 555 DLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEK 376
DL DKI + K L + ++ + + ND+ +FEQ + + + + +L + S +
Sbjct: 716 DLNDKIAVLQKEGSSLASELQQLEASFKNLGNDLEQKFEQISV-MQKNNEELELANSNLQ 774
Query: 375 LKTAIVTESKNGTV 334
+ A+V E KN V
Sbjct: 775 NELAMVQEQKNEAV 788
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/75 (18%), Positives = 37/75 (49%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 379
D L++ ++++ + V +N EK++ E FKN+ + + EL+ + L+ +
Sbjct: 171 DYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESR 230
Query: 378 KLKTAIVTESKNGTV 334
+ + ++ G++
Sbjct: 231 RKLAVLQLQTGGGSL 245
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Frame = +1
Query: 10 LLYMVFILQYFXYNLFNYIMSTIHVDYTFSYFSNFVMFIVEF-FVNTLNCQQGIWVHTVI 186
LL + +++ L NY ++Y F + + F EF F + + +W H
Sbjct: 547 LLALSKLVELLDPQLHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEVLWTHYWS 606
Query: 187 EHFHVVFKAHFSLAKMSLLAQNKSEFDAVV 276
EHFH+ S + + +FD ++
Sbjct: 607 EHFHLYLCVAILKRYRSRIIGEQMDFDTLL 636
>03_02_0227 + 6576333-6577769
Length = 478
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = -3
Query: 336 VTFPRDITKHQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHPNPLL 157
V PR + F + DR+ ++ GQ+++F R R+ V+ V P P +
Sbjct: 5 VPLPRRPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERY--GSTVVRINVPPGPFM 62
Query: 156 A-----IQCINEKLYDKHYKIRKIAKR 91
A + ++ K + + + K+ KR
Sbjct: 63 ARDPRVVALLDAKSFPVLFDVAKVEKR 89
>03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 28.3 bits (60), Expect = 4.5
Identities = 22/91 (24%), Positives = 43/91 (47%)
Frame = -3
Query: 543 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTA 364
++E L+ + SEK ET + ++ E R EL+ ++ +LQS ++ TA
Sbjct: 816 ELEKSLEELTSKLVASEKSNSLAETQLKCMAESYKSLESRKAELENEIKVLQSKIEVLTA 875
Query: 363 IVTESKNGTVTFPRDITKHQHLAIFSERIDD 271
+ + + DIT+++ L ER ++
Sbjct: 876 ELDDERQ---NHQEDITRYRDLEEKIERYEN 903
>02_01_0731 -
5471795-5471811,5471953-5472035,5472235-5472331,
5472460-5472652,5472782-5472849,5473345-5473639
Length = 250
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 376 FFGRLQHVKFGVEFVQTQFKLLKPVAHIVLER 471
FFG L H+K +E FKLL ++ LER
Sbjct: 27 FFGSLSHLKNDLECYLISFKLLPKYRNLHLER 58
>12_01_0121 -
920988-921296,921556-921620,921874-921923,922009-922106,
923832-923867,925351-925731,925839-926324,926471-926647
Length = 533
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 245 PKTKASLMRSSMRSE-NMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSS 418
PK + ++ + S++ + CW M RGN +P +L+ MA N + C+ ++L +S
Sbjct: 71 PKLRPAIQKDSVKQFFQVYNCWSGFMGRGNFLLPDILT-NMANEN-ALRCARVALQGTS 127
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 379
DD+ +IES+L + S++F V ++ N V + E+ + EL+ + L+ E
Sbjct: 372 DDMLSEIESLLSGEIDIPLPSDRFDVKERSWYNSVNSELERLRGLVRELEEREVKLE-GE 430
Query: 378 KLKTAIVTESKNGTVTFPRDI 316
L+ + E + V R +
Sbjct: 431 LLEYYGLKEQETDVVELHRQL 451
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 27.9 bits (59), Expect = 5.9
Identities = 21/95 (22%), Positives = 48/95 (50%)
Frame = -3
Query: 468 FKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIF 289
F+NDV E+FE+R +E+ K+ + ++ + ++ + + T + +++ F
Sbjct: 393 FRNDVE---EKFEMRNHEMQLKIRAWEKTQQFRIEMMADKRAAKKTKALQDMEERYIQDF 449
Query: 288 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLY 184
I D++ + Q+ +F+K K+ DD+ + Y
Sbjct: 450 M-NIVDKLDVPEYF-QQAYFQKFKV--PDDIRLRY 480
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +1
Query: 124 IVEFFVNTLNC---QQGIWVHTVIEHFHVVFKAH--FSLAKMSLLAQNKSEFDAVVDAFR 288
+ EF ++TL + +++ EHF+VV+K H F + + + +N VD+
Sbjct: 349 VTEFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQNIWRSVDSPG 408
Query: 289 KYGQMLVFGNVARKRHRAIFAFRY-DGGFQFFGRLQH 396
+ G ++ ++R +H + + Y +G Q F + H
Sbjct: 409 ESGVLVHDITISRDQHSVLKSGNYFEGAKQSFKKKPH 445
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Frame = +1
Query: 124 IVEFFVNTLNC---QQGIWVHTVIEHFHVVFKAH--FSLAKMSLLAQNKSEFDAVVDAFR 288
+ EF ++TL + +++ EHF+VV+K H F + + + +N VD+
Sbjct: 349 VTEFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFFVLESDVGFRNYQNIWRSVDSPG 408
Query: 289 KYGQMLVFGNVARKRHRAIFAFRY-DGGFQFFGRLQH 396
+ G ++ ++R +H + + Y +G Q F + H
Sbjct: 409 ESGVLVHDITISRDQHSVLKSGNYFEGAKQSFKKKPH 445
>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
Length = 964
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 399 NMLQSAEKLKTA-IVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKL 259
+M KL+ +VT + + T +FP I K +HL S + + +KL
Sbjct: 619 DMFTRLRKLRVLHLVTATTSNTFSFPASIEKLKHLRYLSLQTGEAVKL 666
>04_01_0526 -
6901003-6901056,6901070-6901404,6901423-6901607,
6902201-6904641
Length = 1004
Score = 27.9 bits (59), Expect = 5.9
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Frame = +2
Query: 284 SENMAKCWC--LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNS-----NCS 442
+++ + CW L +S GN+ +V + V + ++ SM+S +S+ +KRN S
Sbjct: 407 NQSTSTCWKKKLPLSNGNMADYVQRTVLLKVPSSNSSQSMISTSSNKWKRNRKHWVLGSS 466
Query: 443 NLLPTSFLNVSWVTINXXXXXXXXXXXXKTDSILSRKSSR 562
+L TS L V++ I+ K + LS+ SS+
Sbjct: 467 LILGTSIL-VNFALISIFLFGTYCRIATKKNIPLSQASSK 505
>10_08_0789 +
20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 408 AKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIK 262
AK N SA+KL T++ E + KH +FSE++ RIK
Sbjct: 550 AKHNCQPSAKKLLTSLFFEKAGFLLICLATFRKHFPKNMFSEQVSKRIK 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,198
Number of Sequences: 37544
Number of extensions: 286446
Number of successful extensions: 924
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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