Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c07
         (563 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.       25   1.3  
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         24   3.9  
AY146741-1|AAO12101.1|  131|Anopheles gambiae odorant-binding pr...    23   6.9  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   6.9  
DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domai...    23   9.1  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   9.1  

>DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.
          Length = 403

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 249 LGQERHFRKRKMRFEDDMEVLYDGV 175
           +G +  FR R++RF DD +   DGV
Sbjct: 311 IGLDALFRLRELRFFDDHDSALDGV 335


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 383 ADCSMLSLASSSFKRNSNCSNLLPTS 460
           + CS LS ASS+   +S   +L PTS
Sbjct: 236 SSCSPLSTASSASCSSSAAGSLCPTS 261


>AY146741-1|AAO12101.1|  131|Anopheles gambiae odorant-binding
           protein AgamOBP10 protein.
          Length = 131

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 172 VHTVIEHFHVVFKAHFSLA-KMSLLAQNKS 258
           VHT+  H H+    H SL+  +SLL+ + S
Sbjct: 28  VHTLTIHSHMTVSLHCSLSLSLSLLSPSFS 57


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 216  MRFEDDMEVLYDGVHPNPLL 157
            +RF +  E L DGV+P+ LL
Sbjct: 978  LRFAEVRERLMDGVNPDTLL 997


>DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 122

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 177 VHPNPLLAIQCINEKLYDKHYK 112
           V P+    I CI  + YD+ YK
Sbjct: 77  VRPDTYFRINCICGEEYDREYK 98


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 207 EDDMEVLYDGVHPNPLLAIQCINEK 133
           E  M  L+D  +P     +QCIN K
Sbjct: 865 EQQMAELHDRWYPEIQSVVQCINGK 889


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,058
Number of Sequences: 2352
Number of extensions: 11120
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)