Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c07
(563 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical ... 33 0.11
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 33 0.19
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 31 0.57
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 1.7
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 1.7
Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 29 2.3
U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alp... 29 2.3
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali... 29 2.3
Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b p... 29 3.1
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 29 3.1
U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain (p... 28 4.0
AL032663-9|CAA21764.2| 187|Caenorhabditis elegans Hypothetical ... 28 5.3
AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in ... 27 7.0
Z68342-6|CAD89740.1| 418|Caenorhabditis elegans Hypothetical pr... 27 9.3
U58749-2|AAK18876.1| 355|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical ... 27 9.3
>AL023835-6|CAA19483.1| 144|Caenorhabditis elegans Hypothetical
protein Y37A1B.6 protein.
Length = 144
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +1
Query: 10 LLYMVFILQYFXYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVN---TLNCQQGIWVHT 180
+ Y F+L YF N+FN + IH TF ++F F++E + + N + ++ H+
Sbjct: 20 IFYYCFMLHYFGKNMFNSNFADIH--NTFLMVASFEQFVLEGYYSIDRASNFPENLYFHS 77
Query: 181 VIEHFHVVFKAH 216
V +V K H
Sbjct: 78 VTG--KIVHKPH 87
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 32.7 bits (71), Expect = 0.19
Identities = 22/102 (21%), Positives = 47/102 (46%)
Frame = -3
Query: 546 DKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKT 367
D + + K V+ L TN ++ +T +FK D N FE+ ++L + + AE +
Sbjct: 96 DTVTRISKLVESLKTNLDQ--LTEHSFKEDRPNSVLFFEITHDDLKSSIKKYSDAEGSMS 153
Query: 366 AIVTESKNGTVTFPRDITKHQHLAIFSERIDDRIKLAFVLGQ 241
++ + K +I + + + I ER ++ ++G+
Sbjct: 154 SLGSVKKISVAPKISEIVEEEDVEILEERKHVEGEIMRIIGE 195
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 31.1 bits (67), Expect = 0.57
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = -3
Query: 309 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 133
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 132 LYDKHYKIRKIAKRVI 85
L + + + K++K +I
Sbjct: 686 LTYETF-MEKMSKYLI 700
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 31.1 bits (67), Expect = 0.57
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = -3
Query: 309 HQHLAIFSERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVLYDGVHP-NPLLAIQCINEK 133
H HL+ + + KL + E F+ +++ F D + LYDG PL+A N+K
Sbjct: 626 HSHLSAYMLFLCTAEKLPWFGDAENMFKLKEVFFNDPLNYLYDGCADFVPLVACFIANKK 685
Query: 132 LYDKHYKIRKIAKRVI 85
L + + + K++K +I
Sbjct: 686 LTYETF-MEKMSKYLI 700
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 543 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 442
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 543 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 442
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 543 KIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRF 442
K+E + + KL N +K ++H++ KND RF
Sbjct: 1738 KLERDFEEIVKLIQNEKKLALSHKSHKNDENRRF 1771
>Z81552-4|CAB04488.2| 765|Caenorhabditis elegans Hypothetical
protein F56G4.6 protein.
Length = 765
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 392 SMLSLASSSFKRNSNCSNLLPTSFLNVSWVT 484
++L L S K NCS +LP SF + +T
Sbjct: 109 TLLKLCKKSIKTTGNCSKILPISFRELPGLT 139
>Z81028-2|CAB02694.1| 996|Caenorhabditis elegans Hypothetical
protein B0365.3 protein.
Length = 996
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 311 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 490
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 29.1 bits (62), Expect = 2.3
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = -3
Query: 477 HETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHL 298
+E + +GN EQ+E +++EL ML A K V + KN + + ++
Sbjct: 497 NEDNERKLGNISEQYEKKVSELGDLKKMLDEARKKFEEDVEQMKNSN----QQVIRNHAN 552
Query: 297 AIFSERIDDRIKLAFVLGQ-ERHFRKRKMRFEDDMEVLYDGVHPNPLLAIQCINEKL--Y 127
A+ S + ++A + ER+F + + R E ++ + + H + C++EK+
Sbjct: 553 AVESLQKTHETQIAEKNKEFERNFEEERARREAEVCAM-NNRHQK---VVACLDEKISEA 608
Query: 126 DKHYKIRKIAKRVIDV----DCTH 67
+K + + K+V+ DC H
Sbjct: 609 EKQCEQLNVDKKVLQAALANDCDH 632
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 29.1 bits (62), Expect = 2.3
Identities = 33/144 (22%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Frame = -3
Query: 477 HETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKHQHL 298
+E + +GN EQ+E +++EL ML A K V + KN + + ++
Sbjct: 565 NEDNERKLGNISEQYEKKVSELGDLKKMLDEARKKFEEDVEQMKNSN----QQVIRNHAN 620
Query: 297 AIFSERIDDRIKLAFVLGQ-ERHFRKRKMRFEDDMEVLYDGVHPNPLLAIQCINEKL--Y 127
A+ S + ++A + ER+F + + R E ++ + + H + C++EK+
Sbjct: 621 AVESLQKTHETQIAEKNKEFERNFEEERARREAEVCAM-NNRHQK---VVACLDEKISEA 676
Query: 126 DKHYKIRKIAKRVIDV----DCTH 67
+K + + K+V+ DC H
Sbjct: 677 EKQCEQLNVDKKVLQAALANDCDH 700
>U18546-1|AAB02615.1| 996|Caenorhabditis elegans Na,K-ATPase alpha
subunit protein.
Length = 996
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 311 LVMSRGNVTVPFLLSVTMAVFNFSADCSMLSLASSSFKRNSNCSNLLPTSFLNVSWVTIN 490
+V +G VP L V A F F D S L+ S R+ +C+N P N+++ + N
Sbjct: 168 IVEVKGGDRVPADLRVVSA-FGFKVDNSSLTGESEPQSRSPDCTNENPLETRNIAFFSTN 226
>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
pathway homologprotein 1 protein.
Length = 1451
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -3
Query: 288 SERIDDRIKLAFVLGQERHFRKRKMRFEDDMEVL 187
S++ D +K+A+ +G+E ++R+ EDD E L
Sbjct: 182 SQKAKDEMKMAYQVGREEALQQRRNDLEDDEENL 215
>Z68342-5|CAA92774.2| 416|Caenorhabditis elegans Hypothetical
protein F38E11.6a protein.
Length = 416
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 436
D+L +I +V +++ N + + F+V +FKN +F++
Sbjct: 303 DNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQDAEKFKR 343
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = -3
Query: 555 DLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAKLNMLQ 388
+L D+IE + VKKL +E V +T ++ +Q LN+ + + +M+Q
Sbjct: 915 ELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQFDMVQ 974
Query: 387 -SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 286
+LKT+ T ++NG + + + + + FS
Sbjct: 975 EELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical protein
F59A2.6 protein.
Length = 1133
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = -3
Query: 555 DLRDKIESVLKHVKKLNTNSEKFMVTHET----FKNDVGNRFEQFELRLNELDAKLNMLQ 388
+L D+IE + VKKL +E V +T ++ +Q LN+ + + +M+Q
Sbjct: 915 ELTDRIEGLEAEVKKLTAANETKAVKADTDARKVVRELQKEVKQLYNELNDKNQQFDMVQ 974
Query: 387 -SAEKLKTAIVTESKNGTVTFPRDITKHQHLAIFS 286
+LKT+ T ++NG + + + + + FS
Sbjct: 975 EELTRLKTSKET-AENGQLQVQKQMDEEDRRSEFS 1008
>AF490976-1|AAQ06434.1| 157|Caenorhabditis elegans Y74C10AM.1b
protein protein.
Length = 157
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 242 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 385
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 242 WPKTKASLMRSSMRSENMAKCWCLVMSRGNVTVPFLLSVTMAVFNFSA 385
WPK K + R + +A C + NV+VPFLL + +N A
Sbjct: 88 WPKDKPEIKRRVL----VALCLLIAAKLANVSVPFLLRDIVNYYNGKA 131
>U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 8 protein.
Length = 813
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 277 DAFRKYGQMLVFGNVARKRHRAIFAFRYDGGFQFFGRLQHVKFGVEFVQTQFKLLK 444
D F + + F + A +R R+ + F GGF F + K+ + + Q QFK+L+
Sbjct: 83 DRFGTFDDVKQFEDNA-ERARSFYGFGGFGGFGFDESVFEYKYRMSYQQYQFKILE 137
>AL032663-9|CAA21764.2| 187|Caenorhabditis elegans Hypothetical
protein Y75B12B.1 protein.
Length = 187
Score = 27.9 bits (59), Expect = 5.3
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 531 VLKHVKKLNTNSEKFMVTHETFKNDV--GNRFEQFELRLNELDAKLNMLQSAEKLKTAIV 358
VL V KLNT S+ F TF ND+ FE + R + + L + S++ +
Sbjct: 16 VLYEVFKLNTFSQGFANFCSTFGNDIMHNREFEFWHRRFYDGNHDLGLEISSQNAIDHEL 75
Query: 357 TESKNGTV 334
+KNG +
Sbjct: 76 ERAKNGQI 83
>AC006809-4|AAO25980.1| 339|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 4 protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 180 RHRALPCRLQSAFFACENVALGPKQKRV*CGRRCVPKIWPN 302
R A+ L S+F E A ++KR CG C P++ P+
Sbjct: 2 RFIAIAALLASSFLLIEATATSTREKRQSCG--CAPRVQPS 40
>Z68342-6|CAD89740.1| 418|Caenorhabditis elegans Hypothetical
protein F38E11.6b protein.
Length = 418
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = -3
Query: 558 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAK 403
D+L +I +V +++ N + + F+V +FKN ++F+ R+N ++ K
Sbjct: 303 DNLTAQISAVYRYIASHNRHDDNFLVVVPSFKNQ-DAELQKFK-RINFMEKK 352
>U58749-2|AAK18876.1| 355|Caenorhabditis elegans Hypothetical
protein B0496.5 protein.
Length = 355
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 22 VFILQYFXYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVIEHFH 198
V +L F + I+ + +SYF N+ +FI+ F +T QG WV + F+
Sbjct: 96 VLLLAAFAIDRLIQIIFPVSYGKFYSYFINWKLFILLIFASTGLSVQG-WVFPLDSRFN 153
>AF016419-1|AAG24051.1| 499|Caenorhabditis elegans Hypothetical
protein F07G11.4 protein.
Length = 499
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 159 LAIQCINEKLYDKHYKIRK 103
L ++C NEK YD +Y RK
Sbjct: 425 LVLKCYNEKYYDLYYSNRK 443
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,029,056
Number of Sequences: 27780
Number of extensions: 276200
Number of successful extensions: 1019
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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