Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c06
(518 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 48 8e-07
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 44 1e-05
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 41 1e-04
SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce... 35 0.006
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 33 0.026
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.2
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 26 3.9
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 5.1
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 5.1
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 25 9.0
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 9.0
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 9.0
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 48.0 bits (109), Expect = 8e-07
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = -1
Query: 329 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNE-FAFDNLFIHG 153
L ++N+ QG+ + V+L+N G +E D +MN++ + I P G++ F +I G
Sbjct: 4 LTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRG 63
Query: 152 RNIRYVHIPENM 117
NI+Y+ I + +
Sbjct: 64 NNIKYLRIQDEV 75
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = -1
Query: 296 VTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIRYVHI 129
VTV+L+ND + G+++ VD F+N+ +N D + A +LFI G +RYVH+
Sbjct: 15 VTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHM 72
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 40.7 bits (91), Expect = 1e-04
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -1
Query: 311 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNE-FAFDNLFIHGRNIRYV 135
L + V+++L+N T V G I VD MN K A+ +G E + L I G NIRY
Sbjct: 10 LTNETVSIELKNGTIVHGTITSVDMQMNTHLK-AVKMTVKGREPVPVETLSIRGNNIRYY 68
Query: 134 HIPENMSL 111
+P+++ L
Sbjct: 69 ILPDSLPL 76
>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 97
Score = 35.1 bits (77), Expect = 0.006
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = -1
Query: 329 LCV--VNSLQGKNVTVDLRN-DTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFI 159
LC+ ++ QG VT++L N TY LIE D MN ++ G D ++I
Sbjct: 3 LCIKLLHETQGHIVTMELENGSTYRGKLIEAEDN-MNCQMRDISVTARDGRVSHLDQVYI 61
Query: 158 HGRNIRYVHIPE 123
G +IR++ +P+
Sbjct: 62 RGSHIRFLIVPD 73
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 33.1 bits (72), Expect = 0.026
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -1
Query: 320 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIR 141
+N + GK V + L + G++ +DG+MN++ + + + FI G N+
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVL 68
Query: 140 YV 135
YV
Sbjct: 69 YV 70
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 249 FNQSTDICVIS*IHSHIFSLQRINNT*KCIMIKELFLRCTYEERCVRHVFCFGLPTSSR 425
+ +S + V+S S F+L+R+ + + K + +EE + ++ FG P SSR
Sbjct: 341 YKESQRMKVLSGSASQPFTLKRLQKDFQLLKAKLICALREWEEDNEKKIYVFGKPLSSR 399
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 412 LLLVGNECNDYLQTIIHISHFKLIYFIY 495
LL++G++ ND+ +IIH S + ++ ++
Sbjct: 70 LLMLGDQVNDFTFSIIHTSIWYNVFVVF 97
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 344 YHNTLLCVVNSLQGKNVTVDLRNDTYVC 261
YH+ +L V+N+ N+ +L N +C
Sbjct: 429 YHDLILYVINTYYSGNIMKNLGNKDLIC 456
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 239 HLLIQSIHRHMCHFLN--PQSHFFLAKN*QHIK 331
HLL+QS C F N PQ +F + H+K
Sbjct: 256 HLLLQSSENQACKFFNIGPQVYFDPRERLLHVK 288
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 159 SWS*YQICAYSRKYVAPINNST*SFQKILQAPYET 55
SW+ Y I +RK + +NN T +QK A ET
Sbjct: 17 SWNKYNIYNIARKQLPALNNRT-LYQKKWNAKKET 50
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -2
Query: 160 FMVVISDMCIFQKICRSYQQFDMKFPKN 77
++VV D IFQ+I +++++ + P+N
Sbjct: 427 YVVVFKDRLIFQEINQNWEEHKGQIPEN 454
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 154 VVISDMCIFQKICRSYQQFDMKFPKNSTSPI*NSS 50
+ +S + + +KIC SY+ + +T+P+ SS
Sbjct: 341 ISVSQISVDEKICTSYESLPKIQLEQNTAPVIESS 375
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 427 YLLEVGNPKQKTCLTQRSS*VHLKKSSFI-IIH--FYVLLILCKEKM*LW 287
+L +GN T + SS HL+K S+ ++H Y L+I +K +W
Sbjct: 30 FLNAIGNENTITPVYADSSLTHLRKKSYTKVVHDCTYALVINPYDKKVIW 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,632
Number of Sequences: 5004
Number of extensions: 41958
Number of successful extensions: 133
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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