Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c06
(518 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744... 48 3e-06
02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249... 48 6e-06
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 40 0.001
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068 36 0.020
11_01_0710 - 5830475-5830595,5831498-5834124 29 2.2
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 29 2.2
11_06_0660 - 26005210-26006150,26006440-26006467,26007307-260078... 28 5.2
03_02_0662 - 10250235-10250433,10250692-10253105 28 5.2
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 27 9.0
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586... 27 9.0
02_05_1150 + 34481965-34482076,34482174-34482268,34482380-344824... 27 9.0
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 27 9.0
>04_04_0192 -
23471346-23471572,23473004-23473195,23474342-23474418,
23475810-23475850,23475928-23475974,23476108-23476194,
23476807-23477011,23477747-23477866
Length = 331
Score = 48.4 bits (110), Expect = 3e-06
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = -1
Query: 311 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 132
L + VT++L+N T V G I VD MN K N D+L + G NIRY
Sbjct: 172 LNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYI 231
Query: 131 IPENMSLLSTIRHEVSK-KFYKPHMKQLTEKTRKTKKAVMQ 12
+P++++L + + + + K KP + R+ + A +Q
Sbjct: 232 LPDSLNLETLLVEDTPRVKAKKPTAGRAAWAVRRERGAAVQ 272
>02_04_0403 -
22622014-22622075,22622159-22622350,22624834-22624910,
22625026-22625039
Length = 114
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = -1
Query: 311 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 132
L + VT++L+N T V G I VD MN K N FD+L + G NIRY
Sbjct: 10 LNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSVRGNNIRYYI 69
Query: 131 IPENMSLLSTIRHEVSK-KFYKP 66
+P++++L + + + + K KP
Sbjct: 70 LPDSLNLETLLVEDTPRVKAKKP 92
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = -1
Query: 329 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEF-AFDNLFIHG 153
L ++ + QG + V+L+N G + D +MNI + I G++F +I G
Sbjct: 4 LSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRG 63
Query: 152 RNIRYVHIPENMSLLSTIRHEVSK 81
I+Y+ +P+ ++ ++ E SK
Sbjct: 64 NTIKYLRVPD--EVIDKVQEETSK 85
>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
Length = 67
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 311 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCD 198
L GK VTV+L+ND + G + VD ++NI +N D
Sbjct: 10 LVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVD 47
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 308 QGKN-VTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNL 165
Q KN V +DL V L E +DG + + N YC GN+F L
Sbjct: 239 QLKNLVHLDLSCCNCVKDLSEALDGLAKLQYLNLSYCHHYGNQFRLRGL 287
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 131 IPENMSLLSTIRHEVSKKFYKPHMKQLTEKTR 36
IP S + ++HE + YKP +K L EK R
Sbjct: 265 IPNLFSCKNLVKHEGNAWMYKPDLKALREKLR 296
>11_06_0660 -
26005210-26006150,26006440-26006467,26007307-26007838,
26008863-26009008
Length = 548
Score = 27.9 bits (59), Expect = 5.2
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +2
Query: 83 WKLHVELLIGATYFLEY 133
WK+H+E+L+G + +EY
Sbjct: 309 WKMHIEILLGVSRAIEY 325
>03_02_0662 - 10250235-10250433,10250692-10253105
Length = 870
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 146 IRYVHIPENMSLLSTIRHEVSKKFYKPHMKQLTEKTRKTKKAVMQ 12
+R HI EN++++ + E+ K+ + Q+T K K++ +Q
Sbjct: 533 VRCSHISENLNMIVQLLQEILKRLNQTFEIQITSSDDKEKQSDLQ 577
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 27.1 bits (57), Expect = 9.0
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = -1
Query: 299 NVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVHIPEN 120
++T +L C L+E+VD F N S ++ I P + +F I G N +IP +
Sbjct: 3 SLTGELPETISSCSLLEIVDLFSN-SIESEI--PPSIGQCSFLQQIILGTNNIRGNIPPD 59
Query: 119 MSLLSTI 99
+ LLS +
Sbjct: 60 IGLLSNL 66
>10_02_0148 -
5859664-5859828,5859916-5860043,5860310-5860451,
5860548-5860643,5860836-5860976,5861799-5861973,
5862416-5862702,5862777-5862870,5863244-5863335,
5863459-5863553,5863648-5863759
Length = 508
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 134 HIPENMSLLSTIRHEVSKKFYKPHMKQLTEK 42
H+ L++ I ++S+K YKP K LTE+
Sbjct: 39 HLVVEGLLIAAILFQLSRKSYKPPKKPLTER 69
>02_05_1150 +
34481965-34482076,34482174-34482268,34482380-34482471,
34482878-34482971,34483191-34483354,34483755-34483929,
34484017-34484157,34484357-34484452,34484549-34484690,
34484953-34485080,34485179-34485343
Length = 467
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 134 HIPENMSLLSTIRHEVSKKFYKPHMKQLTEK 42
H+ L++ I ++S+K YKP K LTE+
Sbjct: 39 HLVVEGLLIAAILFQLSRKSYKPPKKPLTER 69
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.1 bits (57), Expect = 9.0
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = -1
Query: 368 GTPQEKFFYHNTLLCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQG 189
G P E + H + + V + +GK ++ + + T + +I N SFKN D G
Sbjct: 325 GPPAEVRYQHASSMGAVETRKGKTMSGHIDHSTKIMHVIT-----WNRSFKNLPNQDDFG 379
Query: 188 NEFAFDNLF 162
+ F D F
Sbjct: 380 DNFEIDERF 388
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,777,454
Number of Sequences: 37544
Number of extensions: 221430
Number of successful extensions: 497
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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