Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c06
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical p...    46   2e-05
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    42   3e-04
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    40   8e-04
AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    33   0.16 
AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical...    32   0.21 
U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear r...    29   2.6  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   3.5  
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    28   3.5  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   3.5  
AF036704-4|ABA00184.1|  352|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    28   4.6  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    28   4.6  

>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = -1

Query: 314 SLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQ--GNEFAFDNLFIHGRNIR 141
           SL GK+V V+L+ND  +CG +  VD ++N+   +    DP+   +  +  N FI G  +R
Sbjct: 9   SLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNCFIRGSVVR 68

Query: 140 YVHIPENMSLLSTIRHEVSKKFYKPHMKQ 54
           YV +P +      +     K+      KQ
Sbjct: 69  YVQLPSDQVDTQLLADSCRKELLDSKAKQ 97


>Z81097-16|CAE17865.1|  122|Caenorhabditis elegans Hypothetical
           protein K07A1.15 protein.
          Length = 122

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -1

Query: 323 VVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCDPQGNEFAFDNLFIHGRN 147
           V+  + GK V V+LRND YV G++E  D  ++I  + A I  D Q  E       + G++
Sbjct: 17  VLQGMAGKKVFVELRNDVYVIGILESCDSNLDIRIQYATIIRDAQKTE--EPEYLVIGKH 74

Query: 146 IRYVHIPENMSLLSTIR 96
           +R+VH    +  ++ IR
Sbjct: 75  VRFVHFEHQVVPIAAIR 91


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
 Frame = -1

Query: 329 LCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNE-FAFDNLFIHG 153
           L ++ + Q   + V+L+N     G ++  D +MNI   + I+    G++ F     ++ G
Sbjct: 5   LSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRG 64

Query: 152 RNIRYVHIPEN-MSLLSTIRHEVSKK 78
             I+Y+ IPE  + L+ T  +EV ++
Sbjct: 65  STIKYLRIPETVVDLVKTEVNEVRRQ 90


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 311 LQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVH 132
           L  + V ++L+N T V G I  VD  MN   +              D L I G NIRY+ 
Sbjct: 10  LSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYII 69

Query: 131 IPENMSL 111
           +P+ ++L
Sbjct: 70  LPDPLAL 76


>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 305 GKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYV 135
           GK V V L +     G++  +DG+MNI+ +          +  + + FI G N+ Y+
Sbjct: 16  GKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGDAFIRGNNVLYI 72


>AL117204-26|CAB55132.1|  136|Caenorhabditis elegans Hypothetical
           protein Y116A8C.42 protein.
          Length = 136

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = -1

Query: 323 VVNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNI 144
           +++  +G  VT++        G +   +  MN      +     G     DN+FI G  I
Sbjct: 10  ILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69

Query: 143 RYVHIPE 123
           R++ +P+
Sbjct: 70  RFMILPD 76


>U23937-1|AAA65451.1|   71|Caenorhabditis elegans small nuclear
           ribonucleoprotein protein.
          Length = 71

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -1

Query: 296 VTVDLRNDTYVCGLIELVDGFMNISFKNAIYCDPQGNEFAFDNLFIHGRNIRYVHIPE 123
           VT++        G +   +  MN      +     G     DN+FI G  IR++ +P+
Sbjct: 5   VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPD 62


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 254  IELVDGFMNISFKNAIYCDPQGNEFAFDNL 165
            ++L D  ++ S    +  DP G+E AFDN+
Sbjct: 1037 LDLNDRTISFSLNGELLLDPSGSEMAFDNV 1066


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 320 VNSLQGKNVTVDLRNDTYVCGLIELVDGFMNISFKNA-IYCD--PQGNEFAFDNLFIHGR 150
           +NSL GK V   L+      G++  VD +MN+   +A  Y D   QGN      + I   
Sbjct: 13  LNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGN---LGEILIRCN 69

Query: 149 NIRYV 135
           N+ YV
Sbjct: 70  NVLYV 74


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 254  IELVDGFMNISFKNAIYCDPQGNEFAFDNL 165
            ++L D  ++ S    +  DP G+E AFDN+
Sbjct: 1158 LDLNDRTISFSLNGELLLDPSGSEMAFDNV 1187


>AF036704-4|ABA00184.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK185.5 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 146 IRYVHIPENMSLLSTIRHEVSKKFYKPHMK---QLTEKTRKTKKAVMQPYE 3
           ++Y H  EN+S    +R + SKK Y   ++   QL E+  K  + + QP E
Sbjct: 16  VKYYH-NENISFFEKMRRQKSKKEYYSRLEKLNQLYEEDDKLLEGITQPEE 65


>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = -1

Query: 335 TLLCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFM-NISFKNAIYCDPQGNEFAFDNLFI 159
           T  CV+N    +  +++++      G++ +++     +S    I+CD  GN+   +  FI
Sbjct: 680 TFDCVLNERGSRMNSIEIQK----MGILRVLEDLAATLSSPQKIHCDKAGNQKKLEVSFI 735

Query: 158 HGRNIRYVHIPENMSLLSTIRHEVSKKFYKPH-MKQLTEKTRKTKKAVMQPYE 3
           +         P +          V+  +YK H   QL+   R  + +V+Q  E
Sbjct: 736 Y----EITSTPTHQGYQDAKISSVTPSYYKRHPFNQLSGMGRSIQVSVLQKNE 784


>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +1

Query: 214 FLNEMFIKPSTNSINPQTYVSFLKSTVTFFPCKELTTHKSVL**KNFS*GVPMKSAASDM 393
           FL+E+ +      +N Q  +S ++S+ +   CK    H++ +   N    VP+       
Sbjct: 202 FLSELIVFTVLIRLNMQKAISEIRSSAS---CKTFKIHRNFMKSLNMQIAVPIVVICIPS 258

Query: 394 FFALDYLLLVGN 429
           FF L    L GN
Sbjct: 259 FFGLAVPFLQGN 270


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
 Frame = -1

Query: 335 TLLCVVNSLQGKNVTVDLRNDTYVCGLIELVDGFM-NISFKNAIYCDPQGNEFAFDNLFI 159
           T  CV+N    +  +++++      G++ +++     +S    I+CD  GN+   +  FI
Sbjct: 680 TFDCVLNERGSRMNSIEIQK----MGILRVLEDLAATLSSPQKIHCDKAGNQKKLEVSFI 735

Query: 158 HGRNIRYVHIPENMSLLSTIRHEVSKKFYKPH-MKQLTEKTRKTKKAVMQPYE 3
           +         P +          V+  +YK H   QL+   R  + +V+Q  E
Sbjct: 736 Y----EITSTPTHQGYQDAKISSVTPSYYKRHPFNQLSGMGRSIQVSVLQKNE 784


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,185,520
Number of Sequences: 27780
Number of extensions: 235552
Number of successful extensions: 491
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)