Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c03
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 174 3e-44
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 169 7e-43
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 148 2e-36
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 133 5e-32
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.0
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 28 3.0
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 27 5.2
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 27 5.2
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 27 6.9
03_05_0796 + 27787401-27788831 27 6.9
11_06_0513 + 24466131-24469487 27 9.1
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 27 9.1
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 174 bits (423), Expect = 3e-44
Identities = 85/123 (69%), Positives = 98/123 (79%)
Frame = -3
Query: 377 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 198
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 197 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 18
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 17 VTN 9
VTN
Sbjct: 120 VTN 122
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 169 bits (412), Expect = 7e-43
Identities = 82/122 (67%), Positives = 97/122 (79%)
Frame = -3
Query: 377 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 198
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 197 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 18
S+KKTRH LPN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 60 SDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV 119
Query: 17 VT 12
++
Sbjct: 120 IS 121
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 148 bits (358), Expect = 2e-36
Identities = 68/91 (74%), Positives = 78/91 (85%)
Frame = -3
Query: 281 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 102
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 158
Query: 101 KYCAEIAHGVSSKKRKLIVERAQQLSIRVTN 9
YCAEIAH VS+KKRK IVERA QL I VTN
Sbjct: 159 TYCAEIAHNVSTKKRKEIVERAAQLDIVVTN 189
Score = 29.9 bits (64), Expect = 0.97
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -3
Query: 377 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 285
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 133 bits (322), Expect = 5e-32
Identities = 62/96 (64%), Positives = 76/96 (79%)
Frame = -3
Query: 389 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 210
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 209 IGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNR 102
IGYGS+KKTRH LPN F+K +VHNV ELE+LMM NR
Sbjct: 378 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 413
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +3
Query: 36 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 119
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 28.3 bits (60), Expect = 3.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = -3
Query: 287 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVL---VHNVKEL--- 126
+ N +K +G D + G P ++K+R + NGFRKV HN L
Sbjct: 248 RENKQKVKGSDPVKKTTHVGD--KPRCDVQESEKSRRVGNNGFRKVCFWQFHNFHMLLGS 305
Query: 125 EILMMQNRKYCAEIAH 78
++L+ N KY A H
Sbjct: 306 DLLIFSNEKYMAVSLH 321
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 448 FFFPSRAAVSPRGSLSRF 395
F+FPS +SPR SLSRF
Sbjct: 36 FYFPSLIPLSPRISLSRF 53
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 448 FFFPSRAAVSPRGSLSRF 395
F+FPS +SPR SLSRF
Sbjct: 36 FYFPSLIPLSPRISLSRF 53
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 153 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEAD-RGKSPAAQHQSDE 10
GP S G LD K V RRD +R L +A + AA SDE
Sbjct: 35 GPGSFADEHGELDQEKFAVSRRDAARRLIAAVDATLLARRAAAGEGSDE 83
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 63 EAEADRGKSPAAQHQSDECGR 1
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>11_06_0513 + 24466131-24469487
Length = 1118
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -1
Query: 295 TNLRGIGVNLEVLTTESAGGSRVNT*CPTLVTVPTRRPVICSQMDSVR 152
+N+R + + ++ TTE G +T TL+ + T++ V+ Q ++
Sbjct: 559 SNIRYMSLTVDHTTTELPGSLTAHTDLRTLILLRTQKMVLSGQKSEIK 606
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -1
Query: 415 RGSLSRF*KKHTRWL*DLFTGRQSSKRGRRD---LSGINRIAMTNLRGIGVNLEVLTTES 245
R ++S +KH ++L ++ + + R + LSG +M L L VL ++
Sbjct: 181 RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQT 240
Query: 244 AGGSRVNT*CP 212
GGS +NT P
Sbjct: 241 GGGSLMNTSAP 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,550,640
Number of Sequences: 37544
Number of extensions: 233741
Number of successful extensions: 720
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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