Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15c02
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    30   1.3  
09_01_0150 - 2244757-2245303,2252925-2253277                           29   3.0  
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    29   3.9  
02_04_0546 - 23782400-23782599,23782744-23782830,23782923-237834...    29   3.9  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    28   5.2  
01_01_0285 - 2360799-2362631                                           27   9.0  

>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 1/148 (0%)
 Frame = -2

Query: 504 FCNDPHLCKIIEN-NYNYCMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYS 328
           FC DP L +II     ++C     APA  + ++  + K      ++GH  +L      Y 
Sbjct: 331 FCLDPPLQEIIGTWECSWCKSN-AAPAVKVTEVLTSKKIQ---RLVGHRRILQEADFQYQ 386

Query: 327 FLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQIQIRDSFVYDSLQELHE 148
           FL +W  L H+    +  E L    P  V   L+   + +E  +   D    +  +  H 
Sbjct: 387 FLVKWQSLSHHHDCWVPLEWLHVSDPLRVQSYLNKNCLPKE--VYSEDQRKLEWFEVDHA 444

Query: 147 MGCVLVLWSYGSRDHVAHSMRDADLEGY 64
           + C       G  D +A    + D +GY
Sbjct: 445 IACRRKFHHEGLCDVLATFQDNQDFDGY 472


>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 357 VLSNKPPMYSFLKEWFLLP 301
           V  + PP Y+FLKE FLLP
Sbjct: 4   VQRSTPPFYNFLKEGFLLP 22


>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = -2

Query: 453 CMQIFKAPADNMCDIRHNIKRAFKTPVLGHMCVLSNKPPMYSFLKEWF---LLPHYKV 289
           CM+  +   +   +I  ++  +F  P +G +  + N P +++ L  +F    +P+YKV
Sbjct: 469 CMEAKEPVPEEPYEISSDVHGSFDGPRMGRLRAMQNAPHLFAGLTFYFSGHFMPNYKV 526


>02_04_0546 -
           23782400-23782599,23782744-23782830,23782923-23783442,
           23783801-23784000,23784457-23784561,23784923-23785020,
           23785168-23785271
          Length = 437

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 177 VYDSLQELHEMGCV---LVL-WSYGSRDHVAHSMRDADLEGYFDII 52
           VYDSL+++  +  V   L L +SY S  HVAH     DL  Y D+I
Sbjct: 76  VYDSLKQICNIDVVPYSLTLGYSYWSAGHVAHLNIPDDLLPYKDVI 121


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -1

Query: 232 FGQHSHNRRGANSNSRFVCV*QLAGIARNGLRFSLVVVWQ 113
           F  + HNRR    NS+ V +  L+ +    + F + ++W+
Sbjct: 204 FSANVHNRRHQKINSKSVAIIALSAVVLVLMSFGICIIWK 243


>01_01_0285 - 2360799-2362631
          Length = 610

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -2

Query: 552 YLGFEKYKFFEYVIFQFCNDPHLCKIIENNYNYCMQIFKAPADNMCDIRHNIKRAFKTPV 373
           Y+  E Y+FF ++   +     +C+ + N  ++   + + P   +C     I R +K   
Sbjct: 199 YIFLESYQFFTFIFSDWHKVKMMCRYVRNE-SWHRALMEVPLKVLCHF-STITRYWK-GT 255

Query: 372 LGHMCVLSNKPPMY--SFLKEWF 310
           +G   +L N  P +  +FL  WF
Sbjct: 256 IGQYFLLDNIHPHWIKTFL-SWF 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,045
Number of Sequences: 37544
Number of extensions: 369738
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)