Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15c02
(619 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical pr... 31 0.50
Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical p... 31 0.50
U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical pr... 31 0.66
U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical pr... 31 0.66
AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical ... 31 0.66
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ... 31 0.66
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ... 31 0.66
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ... 31 0.66
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 30 1.5
U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81543-1|CAB04423.2| 543|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 28 6.1
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 27 8.1
AF100656-6|AAF99961.1| 240|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 219 LITEEEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
++ E Q+ D ++Y LQ H++GCV V + G
Sbjct: 731 ILRREIQLNNGDEYIYRHLQTTHDVGCVQVTYQIG 765
>Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 219 LITEEEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
++ E Q+ D ++Y LQ H++GCV V + G
Sbjct: 731 ILRREIQLNNGDEYIYRHLQTTHDVGCVQVTYQIG 765
>U55372-1|AAA98002.2| 816|Caenorhabditis elegans Hypothetical
protein C02G6.2 protein.
Length = 816
Score = 31.1 bits (67), Expect = 0.66
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 207 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
E Q+ D ++Y LQ+ H+ GCV V + +G
Sbjct: 751 EFQLNNGDEYIYRHLQKTHDAGCVEVTFKFG 781
>U41029-3|AAF99952.2| 886|Caenorhabditis elegans Hypothetical
protein F47G3.1 protein.
Length = 886
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = -2
Query: 378 PVLGHMCVLSNKPPMYSFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDSTLITEEEQ 199
P+ GH+ ++ K + + +P Y V + + +TW F DST +T+ +
Sbjct: 155 PIEGHVHIIPIKNNAVRLVPDLKYMPKYDYVEPEKKIMTWAFVDSCTALNDSTKLTDYSE 214
Query: 198 IQI--RDSFVY 172
+ + R +FV+
Sbjct: 215 VGVDSRATFVF 225
>AF016421-6|AAT92074.1| 984|Caenorhabditis elegans Hypothetical
protein F44E7.4d protein.
Length = 984
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 207 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 810 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 840
>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
protein F44E7.4c protein.
Length = 1008
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 207 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 751 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 781
>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
protein F44E7.4a protein.
Length = 1067
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 207 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 810 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 840
>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
protein F44E7.4b protein.
Length = 1051
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 207 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
E Q+ D +VY LQ+ H++GCV V + G
Sbjct: 794 ELQLNNGDEYVYRHLQKTHDVGCVEVTYQIG 824
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 509 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 336
FNF T + + T+ + P TTC +GT+LN ++ Q TC C L +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336
Query: 335 C 333
C
Sbjct: 337 C 337
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 509 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 336
FNF T + + T+ + P TTC +GT+LN ++ Q TC C L +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336
Query: 335 C 333
C
Sbjct: 337 C 337
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 509 FNFATTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVC--LATNRQ 336
FNF T + + T+ + P TTC +GT+LN ++ Q TC C L +Q
Sbjct: 280 FNFRRTGRFSCMQLLTSPAPPTTTQAPVTTCFNNGTLLNVANQGQ---TCFCSELFNGKQ 336
Query: 335 C 333
C
Sbjct: 337 C 337
>U55372-2|AAA98001.1| 980|Caenorhabditis elegans Hypothetical
protein C02G6.1 protein.
Length = 980
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -2
Query: 207 EEQIQIRDSFVYDSLQELHEMGCVLVLWSYG 115
E Q+ D ++Y LQ+ H+ GCV V + G
Sbjct: 724 EFQLNNGDEYIYRHLQKTHDAGCVEVTYQIG 754
>Z79603-8|CAH04750.1| 137|Caenorhabditis elegans Hypothetical
protein M163.8 protein.
Length = 137
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/74 (24%), Positives = 29/74 (39%)
Frame = -3
Query: 359 VCLATNRQCIRFLKNGFCCHTTKWSLSKANL*RGDFRTWSCSIWTALS*PKRSKFKFEIR 180
+C+ N C ++ NGFC T S A + ++ SC + + S S
Sbjct: 20 MCMDVNPNCANWVSNGFC---TSSFYSDAQ--KTEYCPASCRLCSGASSTTSSSASSSSS 74
Query: 179 LCMTACRNCTKWVA 138
C + NC W +
Sbjct: 75 TCGDSNSNCASWAS 88
>Z81543-1|CAB04423.2| 543|Caenorhabditis elegans Hypothetical
protein F49B2.1 protein.
Length = 543
Score = 28.3 bits (60), Expect = 4.6
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 183 SFVYDSLQELHEM-GCVLVLWSYGSRDHVAHSMRDA-DLEGYFDIIISEGSTVREERSDL 10
SF +DS Q E G S+GS D ++ SMR A L DII EG + +S L
Sbjct: 123 SFDHDSEQFCKEFEGLKFRTLSFGSNDPLS-SMRTAISLSPQSDIIQLEGEDMSSAKSLL 181
Query: 9 VQN 1
+QN
Sbjct: 182 LQN 184
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 387 FKTPV--LGHMCVLSNKPPMYSFLKEWFLLPH 298
F TP+ L H CVL+ P + LK W + H
Sbjct: 26 FVTPIYPLAHYCVLTKSPKSFGILK-WIIYVH 56
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
protein F28B4.3 protein.
Length = 2229
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 467 TTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCVCLATNRQCIRFL 321
TTT+ P TTC G +L S + C L T R C + L
Sbjct: 331 TTTVPAPTTTAAPLTTCQNGGQVLK-DSSGSPYCYCFGLYTGRDCSQML 378
>AF100656-6|AAF99961.1| 240|Caenorhabditis elegans Hypothetical
protein F49F1.7 protein.
Length = 240
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -3
Query: 497 TTRTCARL*KTTTITVCKYLKRPPTTCATSGTILNAHSKRQCWATCV-CLATNRQCIRFL 321
TT++ T T K K TT AT T + K C ++ C +
Sbjct: 155 TTKSTETTETTETTKAIKTTKTTETTKATKTTTPSTTVKTTTTKPKPPCTDSSPNCTTWA 214
Query: 320 KNGFCCHT 297
KNGFC +T
Sbjct: 215 KNGFCTNT 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,020
Number of Sequences: 27780
Number of extensions: 347428
Number of successful extensions: 993
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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