Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b24
(467 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41677 Cluster: Late expression factor 7; n=5; Nucleopo... 252 2e-66
UniRef50_Q91GE5 Cluster: LEF-7; n=1; Epiphyas postvittana NPV|Re... 116 2e-25
UniRef50_Q2NNV8 Cluster: LEF7; n=1; Hyphantria cunea nucleopolyh... 61 1e-08
UniRef50_O10362 Cluster: Late expression factor 7; n=5; Nucleopo... 54 2e-06
UniRef50_Q8QLL8 Cluster: LEF-7; n=2; Mamestra configurata NPV-A|... 36 0.33
UniRef50_A3HWH1 Cluster: Alkaline phosphatase; n=1; Algoriphagus... 33 4.1
UniRef50_A1GCD1 Cluster: Putative uncharacterized protein; n=1; ... 33 4.1
UniRef50_Q08BS1 Cluster: Zgc:152845; n=2; Danio rerio|Rep: Zgc:1... 32 7.2
UniRef50_A5K7G8 Cluster: Putative uncharacterized protein; n=1; ... 32 7.2
UniRef50_Q1EQT0 Cluster: CRISPR-associated protein; n=2; Strepto... 31 9.5
UniRef50_Q02CP4 Cluster: Sensor protein; n=1; Solibacter usitatu... 31 9.5
UniRef50_A5FI38 Cluster: Amino acid adenylation domain; n=2; Bac... 31 9.5
>UniRef50_P41677 Cluster: Late expression factor 7; n=5;
Nucleopolyhedrovirus|Rep: Late expression factor 7 -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 226
Score = 252 bits (618), Expect = 2e-66
Identities = 119/129 (92%), Positives = 121/129 (93%)
Frame = -2
Query: 412 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQF 233
KRIRLPLEIIDTILQYLDPI HAKVVGLTTRVKCRLLRDNNVEDYLKLTPA+YH TTDQF
Sbjct: 11 KRIRLPLEIIDTILQYLDPILHAKVVGLTTRVKCRLLRDNNVEDYLKLTPASYHPTTDQF 70
Query: 232 ICNYLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLW 53
ICNYLGIT+ PM PYLVPLLSFGKASC FFNKCIPEDVRIVTLN PL LENFLSKQFLW
Sbjct: 71 ICNYLGITNQPMAPYLVPLLSFGKASCVFFNKCIPEDVRIVTLNWPLPLLENFLSKQFLW 130
Query: 52 YKLARKLIE 26
YKLARKLIE
Sbjct: 131 YKLARKLIE 139
>UniRef50_Q91GE5 Cluster: LEF-7; n=1; Epiphyas postvittana NPV|Rep:
LEF-7 - Epiphyas postvittana nucleopolyhedrovirus
(EppoMNPV)
Length = 194
Score = 116 bits (280), Expect = 2e-25
Identities = 62/132 (46%), Positives = 80/132 (60%)
Frame = -2
Query: 403 RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQFICN 224
RLP EI + ILQYL + HAKV+GLT R + RLL N + DYL LTP NYH D+ +
Sbjct: 3 RLPPEIAEEILQYLPAVVHAKVLGLTPRSRKRLLHKNKLMDYLALTPVNYHLPDDKHL-- 60
Query: 223 YLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKL 44
L ++P+TPY+ LL K SC FFNKCIP+ VR+ LN P + FL F W+ L
Sbjct: 61 -LAHFENPLTPYMA-LLCLEK-SCEFFNKCIPKHVRVAALNWPSPNNLKFLCSHFEWFAL 117
Query: 43 ARKLIEPRTSNG 8
+KL++ G
Sbjct: 118 IQKLLKHEHEQG 129
>UniRef50_Q2NNV8 Cluster: LEF7; n=1; Hyphantria cunea
nucleopolyhedrovirus|Rep: LEF7 - Hyphantria cunea
nuclear polyhedrosis virus (HcNPV)
Length = 216
Score = 61.3 bits (142), Expect = 1e-08
Identities = 43/134 (32%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Frame = -2
Query: 403 RLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQFICN 224
+LPL ++ IL YL H V G + R L+ + D L L + T D+F +
Sbjct: 20 QLPLVALNKILSYLPFELHMAVAGANASTRRRALQLPH--DRLALYFKHDIGTNDEFAAH 77
Query: 223 YLGITDHPMTPYLVPLLSFGKASCA--FFNKCIPEDVRIVTLNRPLTSLENFLSKQFLWY 50
+ D P Y+ L F A A FFNKC+P LN P + + LS ++ W+
Sbjct: 78 WAIEVDDPAIAYVSQLCRFSCAIKAQKFFNKCVPNATARCMLNEPRAASDTMLSLRWGWW 137
Query: 49 KLARKLIEPRTSNG 8
+L R LI+ NG
Sbjct: 138 RLVRALIQHECKNG 151
>UniRef50_O10362 Cluster: Late expression factor 7; n=5;
Nucleopolyhedrovirus|Rep: Late expression factor 7 -
Orgyia pseudotsugata multicapsid polyhedrosis virus
(OpMNPV)
Length = 211
Score = 53.6 bits (123), Expect = 2e-06
Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Frame = -2
Query: 442 CRALQSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 263
CR A K +LP E+ID IL +L H VVG + + R LR + +LT
Sbjct: 8 CRLCHQALP-KLPQLPFEMIDKILSHLPFDLHVDVVGASAATRLRALRRPD-----RLTR 61
Query: 262 AN-YHFTTDQFICNYLGI-TDHPMTPYLVPLLSFGKASCA--FFNKCIPEDVRIVTLNRP 95
+ Y D+ + I P PY+ L AS A FFN+ +P + LN P
Sbjct: 62 YHEYDLAADELFAAHWNIEAADPARPYVGQLCRSTCASAAQKFFNERVPRAAAMCMLNAP 121
Query: 94 LTSLENFLSKQFLWYKLARKLIEPRTSNG 8
++ L++++ W+ L R L+ ++G
Sbjct: 122 RAESDSVLTRRWNWWGLTRTLLIHEANSG 150
>UniRef50_Q8QLL8 Cluster: LEF-7; n=2; Mamestra configurata
NPV-A|Rep: LEF-7 - Mamestra configurata NPV-A
Length = 172
Score = 36.3 bits (80), Expect = 0.33
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = -2
Query: 400 LPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQFICNY 221
LP E+ IL++L + V G R +L+ N + Y + PANY+ D+ + +
Sbjct: 17 LPYEMKLKILEHLGIRTFLAVTGDKKRADTLMLKRNRYKLYFETRPANYNIEKDEKLARH 76
Query: 220 LG--ITDHPMTPYLV 182
LG ++D P LV
Sbjct: 77 LGLNVSDIVRLPLLV 91
>UniRef50_A3HWH1 Cluster: Alkaline phosphatase; n=1; Algoriphagus
sp. PR1|Rep: Alkaline phosphatase - Algoriphagus sp. PR1
Length = 602
Score = 32.7 bits (71), Expect = 4.1
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = -2
Query: 433 LQSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKL 269
L +AHE + I++ + I+++ YLDPI+ GL T + LL D E Y L
Sbjct: 62 LMAAHEAESIKID-QTIESL--YLDPITEGLENGLITEINFHLLVDLKTEAYTTL 113
>UniRef50_A1GCD1 Cluster: Putative uncharacterized protein; n=1;
Salinispora arenicola CNS205|Rep: Putative
uncharacterized protein - Salinispora arenicola CNS205
Length = 3677
Score = 32.7 bits (71), Expect = 4.1
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 376 ILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPAN 257
+++ L+PI H+ +G+ + L R N+ +D +L PAN
Sbjct: 1896 LIKELEPIKHSSALGIAINTQAVLRRRNHDQDAQRLAPAN 1935
>UniRef50_Q08BS1 Cluster: Zgc:152845; n=2; Danio rerio|Rep:
Zgc:152845 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 697
Score = 31.9 bits (69), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 415 QKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 263
Q+ R P ++D I Q +DP++ +V + R C + N Y +TP
Sbjct: 607 QELNRCPFRVVDEINQGMDPVNERRVFDIVVRAACGV----NTSQYFFITP 653
>UniRef50_A5K7G8 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1642
Score = 31.9 bits (69), Expect = 7.2
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 15 DVRGSINFLA-NLYHKNCLDKKFSNDVNGRFNVTMRTSSGMHLLKNAQLALPNESKGTKY 191
+++ +N LA N ++ +K +D+N + ++ +R SGM +KN L N+ +G Y
Sbjct: 998 NLKEDLNLLATNFFNTKKEARKNESDINKKIHLLLREKSGM--IKNESLKKLNKKEGKGY 1055
Query: 192 GV 197
V
Sbjct: 1056 SV 1057
>UniRef50_Q1EQT0 Cluster: CRISPR-associated protein; n=2;
Streptomyces|Rep: CRISPR-associated protein -
Streptomyces kanamyceticus
Length = 223
Score = 31.5 bits (68), Expect = 9.5
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 433 LQSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKC 311
LQS HE RLP ++ + LDP+ A GLT R +C
Sbjct: 67 LQSTHEPDLTRLPDGYGTSLSRPLDPLLDALEPGLTVRYRC 107
>UniRef50_Q02CP4 Cluster: Sensor protein; n=1; Solibacter usitatus
Ellin6076|Rep: Sensor protein - Solibacter usitatus
(strain Ellin6076)
Length = 783
Score = 31.5 bits (68), Expect = 9.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 256 NWQVSTLNNLQRCCRAKVCILHALLIPRLLHVKSDPNTAESCL*FLMVN 402
N V + +L R + + HA+L LL+VK+DPN E L L N
Sbjct: 490 NHLVMNVESLLRRVMGEHIVFHAVLADCLLYVKADPNQLEQILINLAAN 538
>UniRef50_A5FI38 Cluster: Amino acid adenylation domain; n=2;
Bacteria|Rep: Amino acid adenylation domain -
Flavobacterium johnsoniae UW101
Length = 3395
Score = 31.5 bits (68), Expect = 9.5
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -2
Query: 433 LQSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPAN- 257
L A++ K ++L E+ T L P S L+ +L +DNN+ED +L+P
Sbjct: 2312 LTDAYQNKLVKLITELSQTKESQLTP-SDLTYSNLSYEELVQLNKDNNIEDVYELSPLQQ 2370
Query: 256 ---YHFTTDQ 236
YH+ D+
Sbjct: 2371 GLYYHWLVDK 2380
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,282,509
Number of Sequences: 1657284
Number of extensions: 8871352
Number of successful extensions: 21614
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21608
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25610991215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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