Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b24
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 27 1.1
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 27 1.9
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe... 25 4.4
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy... 25 5.8
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 7.6
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 25 7.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.6
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 7.6
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 7.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.6
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 15 DVRGSINFLANLYHKNCLDKKFSND 89
+++GS NF N Y N D KFS+D
Sbjct: 705 ELKGSWNFHCNTYLDNLSDYKFSSD 729
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 1.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 451 LLGCRALQSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTT-RVKCRLLRDNN 290
+LGC + + +P D +QY P + G+TT + KCRL +N
Sbjct: 132 MLGCDGCEDWFHGTCVNIPESYNDLTVQYFCPKCTEEGKGITTWKRKCRLRECSN 186
>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 424 AHEQKRIRLPLEIIDTILQYL 362
A + LP+E+ID+++QYL
Sbjct: 26 AQQTSSTLLPVEVIDSVMQYL 46
>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 331 LTTRVKCRLLRDNNVEDYLKLTPANYHF 248
+ T++ +L D + + +KL P NY+F
Sbjct: 48 VATQIPEDILNDKAINEAIKLLPQNYNF 75
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 7.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 184 VPLLSFGKASCAFFNKCIPEDV 119
+PL+S +FF +C+ ED+
Sbjct: 376 IPLISRNLRDFSFFKRCLEEDI 397
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 199 MTPYLVPLLSFGKASCAFFNKCIPEDVRIVTL-NRPLTSL 83
+ PYL+ L+ G A C F+ + + R+ L N+ L S+
Sbjct: 98 INPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISV 137
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 385 IDTILQYLDPISHAKVVGLTTR-VKCRLLRDNNVEDYLKLTPANYHFTTD 239
I + LQ+ KV+ + VKC + ++ Y L PA +H++ D
Sbjct: 752 ITSKLQFSSKTESGKVMKVDKETVKCSVSNNSADSYYFGLAPARFHWSGD 801
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = -2
Query: 307 LLRDNNVEDYLKLTPANYHFTTDQFICNYLGITDHPMTPYLVPLLSFGKASCAFFN 140
++ D +++ KL + FT I NYL + D+ + + C+F N
Sbjct: 431 MVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELVCSFVN 486
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 430 QSAHEQKRIRLPLEIIDTILQYL 362
Q H K RLPLEII I ++L
Sbjct: 4 QHLHSCKFYRLPLEIIPLICRFL 26
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.6 bits (51), Expect = 7.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 181 PLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLEN 77
PLLS K + FF + ++ VT NR +L++
Sbjct: 1544 PLLSVVKDNWLFFQTILTNEINTVTANRYSFALDS 1578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,145
Number of Sequences: 5004
Number of extensions: 40105
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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