Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b24
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0390 + 8056006-8057502                                           30   1.1  
07_03_0604 + 19903654-19904598                                         29   1.9  
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721...    27   10.0 

>03_02_0390 + 8056006-8057502
          Length = 498

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 220 LGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRP 95
           L   DHP  P L   L  G+ +C   + C   D+  V   RP
Sbjct: 157 LSSLDHPFVPTLYARLDAGRYACFLMDYCSGGDLHAVLRRRP 198


>07_03_0604 + 19903654-19904598
          Length = 314

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = -2

Query: 352 SHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYH-FTTDQFICNYLGITDHPMTPYLVPL 176
           S  +V+  TT  K RLLR   ++ ++ +    +  F T     NY  + DHP+ P +  L
Sbjct: 209 SDERVIVFTTNYKERLLRPGRMDMHVYMGYCGWEAFKT--LAHNYFLVDDHPLFPEIRQL 266

Query: 175 LSFGKASCA 149
           L+  +A+ A
Sbjct: 267 LAGVEATPA 275


>01_07_0230 +
           42170382-42170408,42170532-42170648,42171930-42172119,
           42172250-42172369,42172448-42172740,42172872-42172966,
           42173075-42173181,42173514-42173602,42173809-42173895,
           42174053-42174077,42174659-42174966,42175352-42175657
          Length = 587

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +3

Query: 42  ANLYHKNCLDKKFSNDVNGRFNVTMRTSSGMHLLKNA 152
           A+  +++CLD    N +NG F++T+R     H++++A
Sbjct: 384 ASEQYRDCLD----NVLNGPFSITLRNRLQCHVIRDA 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,200,620
Number of Sequences: 37544
Number of extensions: 235681
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)