Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b24
         (467 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    27   0.43 
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    25   1.3  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   5.3  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   5.3  
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    23   7.0  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    23   7.0  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    23   7.0  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       22   9.3  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 436  ALQSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCR 308
            A+ +   Q   ++P   +D I Q +DP +  KV  +     CR
Sbjct: 948  AIYTLSLQHMTQVPFRCVDEINQGMDPTNERKVFNMLVEETCR 990



 Score = 24.6 bits (51), Expect = 1.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -2

Query: 313 CRLLRDNNVEDYLKLTPANYHFTTDQFIC 227
           C+ L  + V+D+ K+ P      T   +C
Sbjct: 134 CQFLPQDRVQDFTKMNPRELLLNTQSSVC 162


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 451 LLGCRALQSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVK---CRLLRD 296
           ++ C    +   +   +LP E+ID +L  +D   H   +G T  +K   CR +++
Sbjct: 29  IISCAYCDATFHRGCCKLPPELIDAVLSNVD--LHWSCIGCTNMLKNPRCRSVKE 81


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 278 IIFNVVVAQKSAFYT 322
           IIFN+ + +K+ FYT
Sbjct: 229 IIFNITLRRKTLFYT 243


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 448 LGCRALQ-SAHEQKRIRLPLEIIDTILQYLDPISH 347
           LGC     S  +  + RL   ++D+IL+Y  P+ H
Sbjct: 782 LGCLMRNHSGPKCAKRRLLASVVDSILRYAAPVWH 816


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 323 ACKMQTFARQQR*RLFKVDT 264
           + ++  F R++R RL++VDT
Sbjct: 495 SAELPVFLREKRSRLYRVDT 514


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 323 ACKMQTFARQQR*RLFKVDT 264
           + ++  F R++R RL++VDT
Sbjct: 495 SAELPVFLREKRSRLYRVDT 514


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 323 ACKMQTFARQQR*RLFKVDT 264
           + ++  F R++R RL++VDT
Sbjct: 473 SAELPVFLREKRSRLYRVDT 492


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +3

Query: 360 SKYCRIVSIISNGKRMRFCSCA 425
           S++C   S+     R  FC C+
Sbjct: 819 SQFCNETSVRDRNCRQEFCECS 840


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 508,951
Number of Sequences: 2352
Number of extensions: 11456
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40820256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)