Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b24
(467 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC038225-1|AAH38225.1| 1101|Homo sapiens structural maintenance ... 31 2.0
AL162390-1|CAH73243.1| 1101|Homo sapiens structural maintenance ... 31 2.0
AJ310550-1|CAC39247.1| 1101|Homo sapiens SMC5 protein protein. 31 2.0
AB011166-1|BAA25520.2| 1120|Homo sapiens KIAA0594 protein protein. 31 2.0
BC091477-1|AAH91477.2| 314|Homo sapiens Yip1 interacting factor... 29 8.0
BC014974-1|AAH14974.1| 294|Homo sapiens YIF1B protein protein. 29 8.0
BC007644-1|AAH07644.1| 310|Homo sapiens YIF1B protein protein. 29 8.0
AY358965-1|AAQ89324.1| 283|Homo sapiens ADPH3073 protein. 29 8.0
AF258578-1|AAG23781.1| 283|Homo sapiens PP4519 protein. 29 8.0
>BC038225-1|AAH38225.1| 1101|Homo sapiens structural maintenance of
chromosomes 5 protein.
Length = 1101
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 415 QKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 263
Q+ R P ++D I Q +DPI+ +V + C+ N Y +TP
Sbjct: 1008 QELNRCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1054
>AL162390-1|CAH73243.1| 1101|Homo sapiens structural maintenance of
chromosomes 5 protein.
Length = 1101
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 415 QKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 263
Q+ R P ++D I Q +DPI+ +V + C+ N Y +TP
Sbjct: 1008 QELNRCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1054
>AJ310550-1|CAC39247.1| 1101|Homo sapiens SMC5 protein protein.
Length = 1101
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 415 QKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 263
Q+ R P ++D I Q +DPI+ +V + C+ N Y +TP
Sbjct: 1008 QELNRCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1054
>AB011166-1|BAA25520.2| 1120|Homo sapiens KIAA0594 protein protein.
Length = 1120
Score = 31.1 bits (67), Expect = 2.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 415 QKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTP 263
Q+ R P ++D I Q +DPI+ +V + C+ N Y +TP
Sbjct: 1027 QELNRCPFRVVDEINQGMDPINERRVFEMVVNTACK----ENTSQYFFITP 1073
>BC091477-1|AAH91477.2| 314|Homo sapiens Yip1 interacting factor
homolog B (S. cerevisiae) protein.
Length = 314
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 361 DPISH-AKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTD-QFICNYLGITDHP 200
DP+S+ A G + + + L D N++ ++ +T Y+F D ++ LG+ P
Sbjct: 75 DPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFP 130
>BC014974-1|AAH14974.1| 294|Homo sapiens YIF1B protein protein.
Length = 294
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 361 DPISH-AKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTD-QFICNYLGITDHP 200
DP+S+ A G + + + L D N++ ++ +T Y+F D ++ LG+ P
Sbjct: 72 DPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFP 127
>BC007644-1|AAH07644.1| 310|Homo sapiens YIF1B protein protein.
Length = 310
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 361 DPISH-AKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTD-QFICNYLGITDHP 200
DP+S+ A G + + + L D N++ ++ +T Y+F D ++ LG+ P
Sbjct: 71 DPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFP 126
>AY358965-1|AAQ89324.1| 283|Homo sapiens ADPH3073 protein.
Length = 283
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 361 DPISH-AKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTD-QFICNYLGITDHP 200
DP+S+ A G + + + L D N++ ++ +T Y+F D ++ LG+ P
Sbjct: 44 DPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFP 99
>AF258578-1|AAG23781.1| 283|Homo sapiens PP4519 protein.
Length = 283
Score = 29.1 bits (62), Expect = 8.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 361 DPISH-AKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTD-QFICNYLGITDHP 200
DP+S+ A G + + + L D N++ ++ +T Y+F D ++ LG+ P
Sbjct: 44 DPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFP 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,044,186
Number of Sequences: 237096
Number of extensions: 1308404
Number of successful extensions: 2478
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2478
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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