Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b24
         (467 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011078-1|AAR82744.1|  972|Drosophila melanogaster SD02276p pro...    29   4.1  
AE014134-1342|AAF52559.2|  928|Drosophila melanogaster CG7144-PA...    29   4.1  
BT029269-1|ABK30906.1| 1256|Drosophila melanogaster IP08282p pro...    28   7.2  
AJ276482-1|CAB81549.1|  769|Drosophila melanogaster putative Sec...    28   7.2  
AE014297-1548|AAF54832.1|  624|Drosophila melanogaster CG18554-P...    28   7.2  
BT024407-1|ABC86469.1|  307|Drosophila melanogaster IP04017p pro...    27   9.6  
AY061461-1|AAL29009.1| 1430|Drosophila melanogaster LD41803p pro...    27   9.6  
AE014297-3525|AAF56280.2| 1430|Drosophila melanogaster CG5728-PA...    27   9.6  
AE013599-2594|ABC66052.1|  394|Drosophila melanogaster CG33996-P...    27   9.6  

>BT011078-1|AAR82744.1|  972|Drosophila melanogaster SD02276p
           protein.
          Length = 972

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 127 EDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEPRTSNG 8
           +D  +V LN PL +L ++LSK+  + +  R L+  R   G
Sbjct: 850 DDTPVVKLNTPLDTLSHYLSKRLAFERDERDLVVLRHEVG 889


>AE014134-1342|AAF52559.2|  928|Drosophila melanogaster CG7144-PA
           protein.
          Length = 928

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 127 EDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEPRTSNG 8
           +D  +V LN PL +L ++LSK+  + +  R L+  R   G
Sbjct: 806 DDTPVVKLNTPLDTLSHYLSKRLAFERDERDLVVLRHEVG 845


>BT029269-1|ABK30906.1| 1256|Drosophila melanogaster IP08282p
           protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 443 MSSVTKRARAKTHTFTIRNYRHDSAVFGSDFTCKSR 336
           +S ++K  R+ T  FT+   RH +   GS F  +SR
Sbjct: 626 LSLLSKTKRSSTECFTLEKKRHQANSEGSSFFRRSR 661


>AJ276482-1|CAB81549.1|  769|Drosophila melanogaster putative Sec23
           protein protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
 Frame = -2

Query: 418 EQKRIRLPLEIIDTILQY---LDPISHAKVVGLTTRVKCRLLRDNNVE-DY-LKLTPANY 254
           E  R+ +PL  +   L+    L PI +  V  L TR  CR + +   + DY  KL   N+
Sbjct: 30  EASRLVVPLACLYQPLKERPDLPPIQYEPV--LCTRSNCRAILNPLCQVDYRAKLWVCNF 87

Query: 253 HFTTDQFICNYLGITDHPMTPYLVP 179
            F  +QF   Y  I++      L+P
Sbjct: 88  CFQRNQFPPQYAAISEQHQPAELIP 112


>AE014297-1548|AAF54832.1|  624|Drosophila melanogaster CG18554-PA
           protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 443 MSSVTKRARAKTHTFTIRNYRHDSAVFGSDFTCKSR 336
           +S ++K  R+ T  FT+   RH +   GS F  +SR
Sbjct: 236 LSLLSKTKRSSTECFTLEKKRHQANSEGSSFFRRSR 271


>BT024407-1|ABC86469.1|  307|Drosophila melanogaster IP04017p
           protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 427 SAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYL 275
           S H    I L L +++   +   P       G T R++CR++++    +Y+
Sbjct: 150 STHPPTSIFLHLSVVEARAEITGPPIRYLTPGSTLRLQCRVVQNTEASEYI 200


>AY061461-1|AAL29009.1| 1430|Drosophila melanogaster LD41803p
           protein.
          Length = 1430

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 145 FNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEPRT 17
           +NK +   V+++ LN    +    + +Q LW K+  K +E +T
Sbjct: 723 YNKPVKVHVKMLRLNAVKNAPVELVPEQLLWVKVLSKEVETKT 765


>AE014297-3525|AAF56280.2| 1430|Drosophila melanogaster CG5728-PA
           protein.
          Length = 1430

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 145 FNKCIPEDVRIVTLNRPLTSLENFLSKQFLWYKLARKLIEPRT 17
           +NK +   V+++ LN    +    + +Q LW K+  K +E +T
Sbjct: 723 YNKPVKVHVKMLRLNAVKNAPVELVPEQLLWVKVLSKEVETKT 765


>AE013599-2594|ABC66052.1|  394|Drosophila melanogaster CG33996-PA
           protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -2

Query: 427 SAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYL 275
           S H    I L L +++   +   P       G T R++CR++++    +Y+
Sbjct: 237 STHPPTSIFLHLSVVEARAEITGPPIRYLTPGSTLRLQCRVVQNTEASEYI 287


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,780,327
Number of Sequences: 53049
Number of extensions: 419481
Number of successful extensions: 1064
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1580609772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)