Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b24
(467 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical ... 34 0.058
AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical ... 29 2.2
AL031627-3|CAA20954.1| 228|Caenorhabditis elegans Hypothetical ... 28 3.8
AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical ... 28 3.8
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 27 5.1
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 27 5.1
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 27 5.1
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 27 5.1
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 27 5.1
U41279-11|AAK31420.1| 146|Caenorhabditis elegans Hypothetical p... 27 6.7
AC026301-2|AAK68896.2| 320|Caenorhabditis elegans Hypothetical ... 27 8.9
AC006617-6|AAF39769.1| 303|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical
protein K06H6.4 protein.
Length = 467
Score = 33.9 bits (74), Expect = 0.058
Identities = 32/108 (29%), Positives = 51/108 (47%)
Frame = -2
Query: 412 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDYLKLTPANYHFTTDQF 233
+R+ + E T++ YLD I +A + L RVK +++DNN TP Y D+
Sbjct: 276 ERLEIRNEQFKTVVDYLDSIHNASIANLRFRVKW-VIKDNN-------TPERYE--NDKQ 325
Query: 232 ICNYLGITDHPMTPYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLT 89
I + + + T L F + C PE+V I+T++ PLT
Sbjct: 326 ITDEMLFHKYQNTSQLGNF--FDQPKCII----RPENVAIMTIHGPLT 367
>AF039051-6|AAB94266.2| 448|Caenorhabditis elegans Hypothetical
protein C14C6.8 protein.
Length = 448
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 412 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDY 278
+R+ + E T++ YLD I +A V L RVK + +N Y
Sbjct: 257 ERLEIRNEQFKTVVDYLDSIHNASVANLHFRVKWVMKHNNTPARY 301
>AL031627-3|CAA20954.1| 228|Caenorhabditis elegans Hypothetical
protein Y102A5C.8 protein.
Length = 228
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 427 SAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRD 296
SAH +PL+II+ IL LDPI + + R CR LR+
Sbjct: 4 SAHAPSLSGMPLDIINRILDKLDPI-----LRFSLRRVCRNLRN 42
>AF039051-4|AAB94264.1| 539|Caenorhabditis elegans Hypothetical
protein C14C6.6 protein.
Length = 539
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 412 KRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRDNNVEDY 278
+RI + E T+ YLD I ++ + L RVK L +N Y
Sbjct: 328 ERIEIRSENFKTVTSYLDSIHNSSISNLHFRVKWVLKHNNTPATY 372
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical protein
ZK1067.1 protein.
Length = 1323
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = -2
Query: 136 CIPED-VRIVTLNRPLTSLENFL 71
C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953 CMHDDGLKIVTIYRPLGNLQNFL 975
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = -2
Query: 136 CIPED-VRIVTLNRPLTSLENFL 71
C+ +D ++IVT+ RPL +L+NFL
Sbjct: 953 CMHDDGLKIVTIYRPLGNLQNFL 975
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = -2
Query: 136 CIPED-VRIVTLNRPLTSLENFL 71
C+ +D ++IVT+ RPL +L+NFL
Sbjct: 1004 CMHDDGLKIVTIYRPLGNLQNFL 1026
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -2
Query: 193 PYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKLAR 38
PY + G+++C K I D +++NRP T + + F W K+ R
Sbjct: 9 PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIR 64
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans
Poly(adp-ribose) metabolism enzymeprotein 1 protein.
Length = 945
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = -2
Query: 193 PYLVPLLSFGKASCAFFNKCIPEDVRIVTLNRPLTSLENFLSKQF----LWYKLAR 38
PY + G+++C K I D +++NRP T + + F W K+ R
Sbjct: 9 PYAIEYAKSGRSNCKTCKKNIALDQLRMSMNRPSTFFDGNMDSWFHYNCFWIKMIR 64
>U41279-11|AAK31420.1| 146|Caenorhabditis elegans Hypothetical
protein C17C3.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 400 LPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLRD 296
+P+E+I I+ Y+DPI+ L R CR LR+
Sbjct: 39 MPIEVIHNIVDYVDPINI-----LVIRKVCRKLRN 68
>AC026301-2|AAK68896.2| 320|Caenorhabditis elegans Hypothetical
protein Y54F10BM.5 protein.
Length = 320
Score = 26.6 bits (56), Expect = 8.9
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = -2
Query: 466 FVXQLLLGCRALQSAHEQKRIRLPLEIIDTILQYLDPI 353
F+ L C + + K + +PL+I++ + + L+P+
Sbjct: 7 FIPSKWLSCLSKSRRNTPKLLAMPLDIVNQVFEKLEPV 44
>AC006617-6|AAF39769.1| 303|Caenorhabditis elegans Hypothetical
protein C39B5.4 protein.
Length = 303
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 430 QSAHEQKRIRLPLEIIDTILQYLDPISHAKVVGLTTRVKCRLLR 299
Q A + LPL++++ +L+ L+P+ LT R CR LR
Sbjct: 9 QCAKGVSLLNLPLDVVNQVLEKLEPMEL-----LTARKVCRSLR 47
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,051,727
Number of Sequences: 27780
Number of extensions: 229864
Number of successful extensions: 669
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -