Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b24
(467 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 2.2
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 2.9
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 2.9
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 3.8
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 22 3.8
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 5.0
AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin prot... 21 5.0
AB073996-1|BAC76400.1| 215|Apis mellifera preprotachykinin prot... 21 5.0
AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin prot... 21 5.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 21 6.6
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 6.6
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 21 6.6
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 6.6
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 8.7
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 2.2
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 278 IIFNVVVAQKSAFYT 322
I+FN+ + +K+ FYT
Sbjct: 226 IVFNITLRRKTLFYT 240
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 22.2 bits (45), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 94 LTSLENFLSKQFLWYKLARKLIEP 23
L + N S Q W++L+ K IEP
Sbjct: 118 LDFVPNHTSDQHEWFQLSLKNIEP 141
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 22.2 bits (45), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 94 LTSLENFLSKQFLWYKLARKLIEP 23
L + N S Q W++L+ K IEP
Sbjct: 118 LDFVPNHTSDQHEWFQLSLKNIEP 141
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.8 bits (44), Expect = 3.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 333 PTTFACEIGSKYCRIVSIISNGK 401
P TF C + + VS + +GK
Sbjct: 324 PATFTCNVRGNPIKTVSWLKDGK 346
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 21.8 bits (44), Expect = 3.8
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +3
Query: 3 SDPFDVRGSINFLANLYHKNCLDKKFSNDVNGRFNVTMRTSSGMHLLKNAQLALPNESKG 182
S P D++ L + H NCL + S +N + S L K A+ ++ G
Sbjct: 279 STPEDLQDLEEPLTTIQHNNCLTRIPSTRINKQHTRGNNFSLSRKLAKFAKEKKAAKTLG 338
Query: 183 TKYGV 197
GV
Sbjct: 339 IVMGV 343
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.4 bits (43), Expect = 5.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 278 IIFNVVVAQKSAFYT 322
I FN+ + +K+ FYT
Sbjct: 225 IFFNITLRRKTLFYT 239
>AB073998-1|BAC76402.1| 339|Apis mellifera preprotachykinin
protein.
Length = 339
Score = 21.4 bits (43), Expect = 5.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 84 WKTFCPNNFYGTSWRES*LNHERQMDR 4
W+ P FYGT ++ L+ ++D+
Sbjct: 178 WEKRAPMGFYGTRGKKIILDALEELDK 204
>AB073996-1|BAC76400.1| 215|Apis mellifera preprotachykinin
protein.
Length = 215
Score = 21.4 bits (43), Expect = 5.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 84 WKTFCPNNFYGTSWRES*LNHERQMDR 4
W+ P FYGT ++ L+ ++D+
Sbjct: 178 WEKRAPMGFYGTRGKKIILDALEELDK 204
>AB073995-1|BAC76399.1| 301|Apis mellifera preprotachykinin
protein.
Length = 301
Score = 21.4 bits (43), Expect = 5.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 84 WKTFCPNNFYGTSWRES*LNHERQMDR 4
W+ P FYGT ++ L+ ++D+
Sbjct: 178 WEKRAPMGFYGTRGKKIILDALEELDK 204
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 278 IIFNVVVAQKSAFYT 322
I FN+ + +K+ FYT
Sbjct: 234 ITFNITMRRKTLFYT 248
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 278 IIFNVVVAQKSAFYT 322
I FN+ + +K+ FYT
Sbjct: 234 ITFNITMRRKTLFYT 248
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 278 IIFNVVVAQKSAFYT 322
I FN+ + +K+ FYT
Sbjct: 230 ITFNITMRRKTLFYT 244
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 21.0 bits (42), Expect = 6.6
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -2
Query: 76 FLSKQFLWYKLARKLIEP 23
FLS FLW L+ P
Sbjct: 407 FLSSLFLWLGYCNSLLNP 424
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.0 bits (42), Expect = 6.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 278 IIFNVVVAQKSAFYT 322
I FN+ + +K+ FYT
Sbjct: 239 ITFNITMRRKTLFYT 253
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 20.6 bits (41), Expect = 8.7
Identities = 7/27 (25%), Positives = 14/27 (51%)
Frame = +1
Query: 7 IHLTFVVQSTFSPTCTIKIVWTKSFPT 87
+H T+V+ + T+ ++W S T
Sbjct: 255 LHATYVIPAVTMMLLTLTVLWLDSRST 281
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,792
Number of Sequences: 438
Number of extensions: 2748
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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