Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b22
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    70   3e-13
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    61   1e-10
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    30   0.29 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.2  

>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 35/106 (33%), Positives = 65/106 (61%), Gaps = 6/106 (5%)
 Frame = -3

Query: 328 KLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD 149
           KL++G++FS+++ V KI+    +D F  Y TSKY LH  ETP+ L+ +  T+ +   +  
Sbjct: 47  KLIFGVVFSLRNMVKKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTH 104

Query: 148 LLKKIYAEIYVKYMIRNPLCEMGEP------IVSDLFKSKLDLFIK 29
           +L++IY  +YV++++++PL     P      I  ++F+  LD F++
Sbjct: 105 VLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVR 150


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 29/98 (29%), Positives = 53/98 (54%)
 Frame = -3

Query: 325 LMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDL 146
           ++ G +  + +  ++ISPL    G    +   + +H L+T +G+KFV+ T+ +    R  
Sbjct: 33  VLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQ 92

Query: 145 LKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFI 32
           L+K Y E+Y  Y+++NP   +  PI   LF  +L  +I
Sbjct: 93  LQKFY-ELYSDYVLKNPFYTLEMPIKCQLFDEQLKRYI 129


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -3

Query: 208 TPSGLKFVMNTDNQ-AQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKL 44
           TPS ++F++   NQ A  ++   ++++ E+Y+K ++ +P  +  +PI S  F  K+
Sbjct: 75  TPSNMRFMLLHQNQSADNIKLFFQELH-ELYIKTLM-SPFYQPNQPIRSQAFDLKV 128


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 341  TIKYHIDRICINCKWSFFIFSLEYTVSRTKKITNFHKIN-IPDYKNNNINIFDL 499
            TI Y +DR C+ C     I SL    S  K +T+ +  N + D++  +  I ++
Sbjct: 1098 TIDY-LDRNCVTCSDKHVIISLLLVSSWEKFLTSNNYSNYLADFETTHAQIMEM 1150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,997
Number of Sequences: 5004
Number of extensions: 50330
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)