Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b22
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333...    73   2e-13
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024     56   2e-08
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263...    56   3e-08
03_01_0071 + 580988-581134,581276-581359,581499-581573,581892-58...    28   4.8  

>01_05_0102 -
           18131640-18131655,18132928-18133046,18133186-18133300,
           18134072-18134325
          Length = 167

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 13/99 (13%)
 Frame = -3

Query: 328 KLMYGMLFSIKSFVSKISP-----------LDPKDGFSHY--KTSKYTLHCLETPSGLKF 188
           KLM+G+LFS++SF +KI P           L P  G S Y  KT+ Y L+ LE+PSG+K 
Sbjct: 65  KLMFGLLFSLRSFTAKIDPTTAEKGNLGVPLLPGQGCSFYSFKTNTYKLNFLESPSGIKL 124

Query: 187 VMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPI 71
           ++ T  +    RD LK IY  +YV+Y+++NPL   G PI
Sbjct: 125 ILITHPRTGDQRDTLKHIY-NLYVEYVVKNPLYAPGTPI 162


>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
          Length = 143

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 29/93 (31%), Positives = 49/93 (52%)
 Frame = -3

Query: 304 SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAE 125
           S+ +   ++SP    +G    +   + LHC ++ +G KF    +  AQ +  LLK IY E
Sbjct: 44  SMHAISQQLSPTPGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-E 102

Query: 124 IYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQ 26
           +Y  ++++NP  EM  PI  +LF   L   I++
Sbjct: 103 LYTDFVLKNPFYEMEMPIRCELFDLNLAQVIQK 135


>06_01_0367 -
           2636487-2636498,2636655-2636724,2636831-2636937,
           2637208-2637226,2637383-2637470,2638175-2638303,
           2638428-2638506,2639658-2639720,2640437-2640535,
           2641583-2641740,2642926-2643094,2643174-2643239
          Length = 352

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 28/87 (32%), Positives = 46/87 (52%)
 Frame = -3

Query: 304 SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAE 125
           S+ +   ++SP    +G    +   + LHC ++ +G KF    +  AQ +  LLK IY E
Sbjct: 44  SMHAISQQLSPTHGCEGIDLLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-E 102

Query: 124 IYVKYMIRNPLCEMGEPIVSDLFKSKL 44
           +Y  ++++NP  EM  PI  +LF   L
Sbjct: 103 LYTDFVLKNPFYEMEMPIRCELFDLNL 129


>03_01_0071 +
           580988-581134,581276-581359,581499-581573,581892-581973,
           582078-582223,582337-582408,582765-582837,582933-582998,
           583089-583123,583316-583387,583494-583622,583706-583813,
           584062-584118,584323-584439,584530-584612,585345-585411,
           585705-585776,585874-585924,586704-586763,586867-587016,
           587107-587322
          Length = 653

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = -3

Query: 370 TYSIDMVLYCIMEGKLMYGMLFSIKSFVSKISPL-DPKDGFSHYKTSKYTLHCLETPSGL 194
           T  +D+VLY    G +  GM+F +   ++++S + D KD F + ++ +  L   E     
Sbjct: 126 TRLLDIVLYLCERGHVEGGMVFQLLEDLTEMSTIKDCKDVFGYIESKQDVLGKQELFGRG 185

Query: 193 KFVM-NTDNQ 167
           K VM  T NQ
Sbjct: 186 KLVMLRTCNQ 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,533,774
Number of Sequences: 37544
Number of extensions: 250763
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)