Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b22
(585 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein par... 136 4e-32
AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein. 136 4e-32
BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein. 68 3e-11
AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein. 68 3e-11
AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein. 68 3e-11
BC018024-1|AAH18024.1| 139|Homo sapiens trafficking protein par... 30 6.9
BC011369-1|AAH11369.1| 139|Homo sapiens trafficking protein par... 30 6.9
BC028127-1|AAH28127.1| 157|Homo sapiens chromosome 10 open read... 29 9.1
>BC032717-1|AAH32717.1| 145|Homo sapiens trafficking protein
particle complex 1 protein.
Length = 145
Score = 136 bits (330), Expect = 4e-32
Identities = 60/111 (54%), Positives = 85/111 (76%)
Frame = -3
Query: 334 EGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGV 155
E KLMYGMLFSI+SFVSK+SPLD KDGF ++TS+Y LH ETP+G+K VMNTD +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 154 RDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQTPIHTVRA 2
RD+L IY+ +YV+ +++NPLC +G+ + S+LF+S+LD +++ P + RA
Sbjct: 94 RDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFFSARA 144
Score = 32.7 bits (71), Expect = 0.98
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 389 MTIYNLYIFDRYGTLLYYGRQINVRNAFLDKIIRFK 282
MT++NLY+FDR G L+Y + A + K +K
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYK 36
>AF129332-1|AAD44697.1| 145|Homo sapiens MUM2 protein.
Length = 145
Score = 136 bits (330), Expect = 4e-32
Identities = 60/111 (54%), Positives = 85/111 (76%)
Frame = -3
Query: 334 EGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGV 155
E KLMYGMLFSI+SFVSK+SPLD KDGF ++TS+Y LH ETP+G+K VMNTD +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 154 RDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQTPIHTVRA 2
RD+L IY+ +YV+ +++NPLC +G+ + S+LF+S+LD +++ P + RA
Sbjct: 94 RDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFFSARA 144
Score = 32.7 bits (71), Expect = 0.98
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 389 MTIYNLYIFDRYGTLLYYGRQINVRNAFLDKIIRFK 282
MT++NLY+FDR G L+Y + A + K +K
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYK 36
>BC010866-1|AAH10866.1| 219|Homo sapiens TRAPPC4 protein protein.
Length = 219
Score = 67.7 bits (158), Expect = 3e-11
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = -3
Query: 328 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 152
KLM +F S+ + S++SP G +T + LHC +T +G+KFV+ D + G+
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 151 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 29
LL+KIY EIY + ++NP + PI +LF L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>AF151862-1|AAD34099.1| 219|Homo sapiens CGI-104 protein protein.
Length = 219
Score = 67.7 bits (158), Expect = 3e-11
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = -3
Query: 328 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 152
KLM +F S+ + S++SP G +T + LHC +T +G+KFV+ D + G+
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 151 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 29
LL+KIY EIY + ++NP + PI +LF L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>AF105025-1|AAF21897.1| 219|Homo sapiens unknown protein.
Length = 219
Score = 67.7 bits (158), Expect = 3e-11
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = -3
Query: 328 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 152
KLM +F S+ + S++SP G +T + LHC +T +G+KFV+ D + G+
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 151 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 29
LL+KIY EIY + ++NP + PI +LF L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207
>BC018024-1|AAH18024.1| 139|Homo sapiens trafficking protein
particle complex 2-like protein.
Length = 139
Score = 29.9 bits (64), Expect = 6.9
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -3
Query: 244 YKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD-LLKKIYAEIYVKY--MIRNPLCEMGEP 74
Y T Y ++ T S +KFVM D+ +RD ++ ++ +++ Y ++ NP G+
Sbjct: 62 YPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDR 121
Query: 73 IVSDLF 56
I S F
Sbjct: 122 IQSRAF 127
>BC011369-1|AAH11369.1| 139|Homo sapiens trafficking protein
particle complex 2-like protein.
Length = 139
Score = 29.9 bits (64), Expect = 6.9
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -3
Query: 244 YKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD-LLKKIYAEIYVKY--MIRNPLCEMGEP 74
Y T Y ++ T S +KFVM D+ +RD ++ ++ +++ Y ++ NP G+
Sbjct: 62 YPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDR 121
Query: 73 IVSDLF 56
I S F
Sbjct: 122 IQSRAF 127
>BC028127-1|AAH28127.1| 157|Homo sapiens chromosome 10 open reading
frame 53 protein.
Length = 157
Score = 29.5 bits (63), Expect = 9.1
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = -3
Query: 271 LDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPL 92
L P +S+ T H L +P G+K V Q +DL + A+I + L
Sbjct: 75 LTPSSDKRTTSSSRLTFHQLSSPCGMK-VSPLQQFPQKTQDLTCIVLAQIGSCIHFQTNL 133
Query: 91 CEMGEPIVSDLFKSKLD 41
C++G P + + S L+
Sbjct: 134 CDLGWPGLDHMLISGLE 150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,961,496
Number of Sequences: 237096
Number of extensions: 1505077
Number of successful extensions: 2359
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2356
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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