Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b22
         (585 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4558|AAF57019.1|  145|Drosophila melanogaster CG1359-PA...   149   4e-36
AE014134-1552|AAF52701.1|  219|Drosophila melanogaster CG9298-PA...    67   2e-11
BT010226-1|AAQ23544.1| 2240|Drosophila melanogaster RE72677p pro...    30   2.7  
AE014297-2224|AAF55327.2| 2240|Drosophila melanogaster CG14900-P...    30   2.7  
AB053260-1|BAB20634.1| 2240|Drosophila melanogaster Cad89D protein.    30   2.7  

>AE014297-4558|AAF57019.1|  145|Drosophila melanogaster CG1359-PA
           protein.
          Length = 145

 Score =  149 bits (360), Expect = 4e-36
 Identities = 66/110 (60%), Positives = 91/110 (82%)
 Frame = -3

Query: 334 EGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGV 155
           E KL YGMLFSIKSFVSKISP DPK+GF +YKT++Y LH LETPSGLKFV+NTD  A  V
Sbjct: 34  EAKLTYGMLFSIKSFVSKISPHDPKEGFLYYKTNRYALHYLETPSGLKFVLNTDTTAINV 93

Query: 154 RDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQTPIHTVR 5
           ++LL+++YA+++V++++R+PL   G  + S+LF+SKLD F++Q+PI  +R
Sbjct: 94  KELLQQLYAKVWVEFVVRDPLWTPGTVVTSELFQSKLDEFVRQSPIFGIR 143



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 14/18 (77%), Positives = 18/18 (100%)
 Frame = -2

Query: 389 MTIYNLYIFDRYGTLLYY 336
           MTI+NLYIFD++GTLL+Y
Sbjct: 1   MTIFNLYIFDKFGTLLHY 18


>AE014134-1552|AAF52701.1|  219|Drosophila melanogaster CG9298-PA
           protein.
          Length = 219

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 30/96 (31%), Positives = 55/96 (57%)
 Frame = -3

Query: 313 MLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKI 134
           M + + +  S++SP     G    +   +TLHC +T +G+KF++ ++    G+  LL+K+
Sbjct: 114 MFYPLFAIASQLSPEPKSSGIEILEADTFTLHCFQTLTGIKFIIISETGLNGIDLLLRKV 173

Query: 133 YAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQ 26
           Y E+Y  Y+++NP   +  PI  +LF +KL   + Q
Sbjct: 174 Y-ELYSDYVLKNPFYSLEMPIRCELFDNKLQELLAQ 208


>BT010226-1|AAQ23544.1| 2240|Drosophila melanogaster RE72677p protein.
          Length = 2240

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 292  FVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTD 173
            FV K +   P +  ++Y+TS ++LH     SG++F+ + +
Sbjct: 2052 FVLKYNACQPVNNLNNYETSLFSLHSTGQDSGVEFLSSRE 2091


>AE014297-2224|AAF55327.2| 2240|Drosophila melanogaster CG14900-PA
            protein.
          Length = 2240

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 292  FVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTD 173
            FV K +   P +  ++Y+TS ++LH     SG++F+ + +
Sbjct: 2052 FVLKYNACQPVNNLNNYETSLFSLHSTGQDSGVEFLSSRE 2091


>AB053260-1|BAB20634.1| 2240|Drosophila melanogaster Cad89D protein.
          Length = 2240

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 292  FVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTD 173
            FV K +   P +  ++Y+TS ++LH     SG++F+ + +
Sbjct: 2052 FVLKYNACQPVNNLNNYETSLFSLHSTGQDSGVEFLSSRE 2091


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,829,528
Number of Sequences: 53049
Number of extensions: 458345
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)