Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b22
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical ...    71   5e-13
U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    50   9e-07
AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical...    29   2.4  
Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF025453-8|AAK31403.1|  318|Caenorhabditis elegans Hypothetical ...    27   7.4  
U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF125956-1|AAV28359.1|  472|Caenorhabditis elegans Hypothetical
           protein DC2.3b protein.
          Length = 472

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 32/70 (45%), Positives = 48/70 (68%)
 Frame = -3

Query: 340 IMEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQ 161
           I E KL++GM+ S+KSFV +++  D     ++YKTS Y +  LE+ + +K ++NTD  A 
Sbjct: 32  IQEYKLVFGMMLSMKSFVDRLATNDSNQTVNYYKTSAYKMTFLESATSIKIMLNTDPNAT 91

Query: 160 GVRDLLKKIY 131
           G+RDLL KIY
Sbjct: 92  GIRDLLHKIY 101



 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -2

Query: 389 MTIYNLYIFDRYGTLLYYGRQINVRNAFLDKIIRFK 282
           MTIYN+YIFDR G  LYY      + + L  I  +K
Sbjct: 1   MTIYNVYIFDREGQCLYYDEWFRTKQSGLAPIQEYK 36


>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 26/101 (25%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = -3

Query: 325 LMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD- 149
           ++  M  S+ +   ++SP     G    +T+++ L CL++ +G+KFV+ T   +    D 
Sbjct: 115 ILSSMFHSLFTIAVQLSPCQKSSGVEVLETTQFKLFCLQSRTGVKFVVITSAASNIAADS 174

Query: 148 LLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQ 26
           LL K+Y E+Y  + ++NP   +  PI +  F   +   +++
Sbjct: 175 LLSKMY-ELYTDFALKNPFYSIDMPIRAQKFDEAIKTLLER 214


>AL132860-19|CAB60502.1|  159|Caenorhabditis elegans Hypothetical
           protein Y56A3A.21 protein.
          Length = 159

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 277 SPLDPKDGFSHYKT---SKYTLHCLETPSGLKFVMNTDNQ 167
           S     DGF HYKT   +++TL C   P  +++    + +
Sbjct: 27  SSFSTTDGFFHYKTTFITEFTLQCSNNPKNIQYTAEVNGR 66


>Z78061-2|CAB01493.1|  474|Caenorhabditis elegans Hypothetical
           protein C48G7.2 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 356 IDRICINCKWSFFIFSLEYTVSRTKKITNFHKINIPDYK 472
           I+  C+N  + + +FSL  +VSR KK  N +  N  +YK
Sbjct: 399 IEHYCVNENY-YNLFSLIISVSRKKKSENLNFENRKNYK 436


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical protein
            ZK1193.2 protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 331  GKLMYGMLFSI-KSFVSKISPLDPKDGFSHYKTSKYTLHC 215
            G L Y  +F + ++ ++  SPL  +DG ++   S+YT  C
Sbjct: 954  GTLTYAQIFDLDETRIAWASPLIKRDGCAYPFISEYTFQC 993


>AF025453-8|AAK31403.1|  318|Caenorhabditis elegans Hypothetical
           protein C08F1.3 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +2

Query: 338 NTIKYHIDRICINCKWSFFIFSLEYTVSRTKKITNFH---KINIPDYKNNNINIFDL 499
           N +  +I    +N KWS    S    +    ++TN H   K++I D KN  I++ DL
Sbjct: 77  NIVYIYIHSRTVNAKWSLPGMSTRQWIDHFMELTNSHRIFKLSI-DAKNPEIDMKDL 132


>U80841-1|AAB37939.1|  477|Caenorhabditis elegans Hypothetical
           protein C13A10.1 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
 Frame = -2

Query: 377 NLYIFDRYGTL---LYYGRQIN 321
           NL ++DRYG L   +YYG  +N
Sbjct: 356 NLVLYDRYGNLTNVIYYGMNVN 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,483
Number of Sequences: 27780
Number of extensions: 269105
Number of successful extensions: 634
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)