Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b21
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0464 + 3597568-3600244,3600345-3600742 31 1.0
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 31 1.0
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 29 2.4
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 2.4
07_03_0006 + 12268852-12269146,12269362-12269487,12269536-122697... 29 4.1
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 5.5
02_05_0612 + 30348495-30348995,30349679-30350023 28 5.5
11_01_0605 + 4821363-4823246 28 7.2
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 28 7.2
10_01_0021 - 281130-281224,281758-281842,281916-281971,282408-28... 28 7.2
05_03_0307 + 12027505-12027565,12028300-12028925 28 7.2
02_05_0680 - 30824652-30826010 28 7.2
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152 27 9.6
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548... 27 9.6
07_03_1334 + 25864805-25865328,25865592-25865808 27 9.6
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326... 27 9.6
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802... 27 9.6
02_04_0310 - 21932418-21932531,21932627-21932869 27 9.6
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 227
PS H+L V ++ N F+ + P +SL++L D F+ +P+S+ N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTG-LIPSSLFNLTNLV 442
Query: 226 KEAIPRNKFKAK 191
+ NKF +
Sbjct: 443 HLFLYSNKFSGQ 454
>08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -2
Query: 577 VANADLAEANRSLILFANEMIVARRDAETARQDCENA---RRETAQLANRMADIAQDVIA 407
+A+ L EAN +N + + D + C NA E L ++A+ Q +IA
Sbjct: 1817 IASGLLEEANLFAPSLSNAYLPSEHDENHIEEKCSNATLLEDEDTYLRQKLANNVQKIIA 1876
Query: 406 KPSNPQLC 383
K S LC
Sbjct: 1877 KGSANNLC 1884
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -2
Query: 448 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFS 269
L ++M++++ + N C+S+ V D+ NN + RP + S + + D +
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVLV 339
Query: 268 SD 263
D
Sbjct: 340 DD 341
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 536 FVCQRNDCGSTRR*NGSARLRKRAP 462
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>07_03_0006 +
12268852-12269146,12269362-12269487,12269536-12269753,
12269918-12270292,12270376-12270610,12270698-12270861
Length = 470
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Frame = -2
Query: 370 VCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPR------ 209
V D GNN F + P K L R ++ N + +V N++K AIP+
Sbjct: 285 VYDNGNNTFRTIFPSKVELQRMVEWGQVNTKFVKAKMEMKERDVGNEIKYAIPKIVDMKL 344
Query: 208 -NKFKAKHNRITLLEDYTREELMNVI 134
++ A H ++ +L+ E ++VI
Sbjct: 345 TKRYDAAHLQVLVLDHSLIPESVDVI 370
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/67 (20%), Positives = 29/67 (43%)
Frame = -2
Query: 625 QMMLLPKIDDXTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQL 446
QM+ +P T L D +++R NE++ A+ + ++D E AQ
Sbjct: 2352 QMLAVPSSGQATSSLEGGMGDFTDSSRHSREIKNELLAAQENIRILQKDVAEKETEIAQC 2411
Query: 445 ANRMADI 425
++++
Sbjct: 2412 KAHISEL 2418
>02_05_0612 + 30348495-30348995,30349679-30350023
Length = 281
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 327 CGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 470
C R NA R W + +L +A+ + M A LA C+V R+
Sbjct: 231 CFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278
>11_01_0605 + 4821363-4823246
Length = 627
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKV 227
PS+ L SL D+GNNE + P L+RL + + S VP+S+ L ++
Sbjct: 480 PSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDLSK-NYLSGQVPSSVANLERL 537
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = -2
Query: 403 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLG-RSLKRLGSNDVIFSSDYVPNSMNVLNKV 227
PS+ ++C +L D+GNN F P G SLK L F+ + +P+ ++ L+++
Sbjct: 577 PSSLEMCKALITLDIGNNRFFGGIPPWIGKGLLSLKFLSLKSNNFTGE-IPSELSNLSQL 635
Query: 226 K 224
+
Sbjct: 636 Q 636
>10_01_0021 -
281130-281224,281758-281842,281916-281971,282408-282584,
282686-282805,283004-283096,283548-283668,283772-283804,
284001-284082,286600-286739
Length = 333
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 214 PRNKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARM 98
P N + HNR ++L++ L N G T RQ+ M
Sbjct: 99 PPNAIQHLHNRQSMLQEVADLNLSNAYGEVCTPRQLVIM 137
>05_03_0307 + 12027505-12027565,12028300-12028925
Length = 228
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -1
Query: 584 IDGGQRRFGGSQPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNGAAGQPHGGHCARRD 411
+ GG R GG+ V +R + +R SA R A AAG GG AR D
Sbjct: 101 VAGGGHRHGGA------VAKRGEGKGEKRRRSSAHPRSTATTKKAAGAEEGGGAARVD 152
>02_05_0680 - 30824652-30826010
Length = 452
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 478 CENARRETAQLANRMADIAQDVIAKPSNPQ 389
C+N E AN M D +++AKP +PQ
Sbjct: 257 CDNQCLEAMSKANAMYDALVNLVAKPVSPQ 286
>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
Length = 1044
Score = 27.5 bits (58), Expect = 9.6
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Frame = -2
Query: 550 NRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLCHSLA 371
NR +L + A + E + ET + + + + VI + QL H L
Sbjct: 937 NRPKVLLLKSVDTAESEHTDVDSVMEAVKSETTEYSIA-PEGPEQVIDMNNKMQLDHGLE 995
Query: 370 VCDVGN--NEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM 245
V N N FA K L S +G +DV + +PN M
Sbjct: 996 SSSVLNKQNNFADQSSSKDQLHYSFNNMGLSDVSPAVSELPNGM 1039
>10_08_0960 -
21853010-21853282,21854078-21854449,21854555-21854862,
21854946-21855102
Length = 369
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -2
Query: 598 DXTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
D T++L A ++ + +L A E ARR E + NA R A+L R+A +
Sbjct: 154 DHTERLRRALGEVRRRHYRSLLGAAEAAAARRMRE-KEAEASNAARRGAELEERVARLRA 212
Query: 418 DVIA 407
+ A
Sbjct: 213 EAAA 216
>07_03_1334 + 25864805-25865328,25865592-25865808
Length = 246
Score = 27.5 bits (58), Expect = 9.6
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 2/159 (1%)
Frame = -2
Query: 583 LTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAK 404
+ A A AE ++ MI + + E + E + R++ +AN + D DVI
Sbjct: 1 MAAAAAAAAEEEEEKESGSSRMITLKSNDEKLVEVTEASARQSRAIANLIDDGCADVIPL 60
Query: 403 PS--NPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNK 230
P+ + L + CD + ++ +LGR F +D+V L+K
Sbjct: 61 PNVDSKTLAKVIPYCDEHGRANSGTDEERAALGR-----------FDADFV----GELDK 105
Query: 229 VKEAIPRNKFKAKHNRITLLEDYTREELMNVIGSTMTDR 113
K ++ A + I L D T + + + IGS ++
Sbjct: 106 DKASLIDVIMAANYLNIQGLLDITCQRVADTIGSATAEK 144
>04_01_0248 +
3254493-3254599,3258414-3258681,3260797-3261074,
3261708-3261711,3263037-3263118,3263196-3263220,
3263498-3263599,3264123-3264306,3264902-3265068,
3265233-3265866
Length = 616
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 367 CDVGNNEFAFLRPQKRSLGRSLKRLGSND 281
C V F +L P + LGR K+LG D
Sbjct: 341 CSVLTPCFTYLNPTNKQLGRLFKKLGYGD 369
>02_05_0350 -
28179063-28179584,28179674-28180041,28180179-28180270,
28180366-28180412
Length = 342
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -2
Query: 604 IDDXTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADI 425
I + ++L A AD + +L A E ARR E A + E R A+L R+A +
Sbjct: 166 IKEQGEQLRRAMADRVRRHNRALLVAAERSAARRLREKA-LEAEREARRGAELEERLARL 224
Query: 424 AQDVIA 407
+ A
Sbjct: 225 RSEAAA 230
>02_04_0310 - 21932418-21932531,21932627-21932869
Length = 118
Score = 27.5 bits (58), Expect = 9.6
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 575 GQRRFGGSQPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNG--AAGQPHGGHCARRDSQT 402
G R GG P + +R+ G AR R+ A R G AAGQ H G +S T
Sbjct: 5 GGRPSGGGGPALQRL-RRHAAGKVAS-RSLARCREGARRRGRQAAGQRHSGRQGSNESTT 62
Query: 401 Q-QP 393
Q QP
Sbjct: 63 QSQP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,964,986
Number of Sequences: 37544
Number of extensions: 339200
Number of successful extensions: 1189
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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