Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b21
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 32 0.40
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 32 0.40
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 32 0.40
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 32 0.40
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 32 0.40
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 32 0.40
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 32 0.40
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 32 0.40
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.70
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 31 0.70
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 29 3.7
Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical pr... 28 4.9
U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associa... 28 4.9
U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associa... 28 4.9
AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein. 28 4.9
AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical ... 28 4.9
AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin assoc... 28 4.9
Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.40
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Frame = -2
Query: 589 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QD 416
Q+L +LAE L NE+ + + +D + AR ET Q++ R+ ++ D
Sbjct: 2926 QRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVD 2985
Query: 415 VIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVL 236
+ + L L + + + + + +L R+++ + +SD+ P S + L
Sbjct: 2986 DVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFL 3045
Query: 235 NKVKEAIPRNKFKAKHNRITLLEDYTREE 149
N+ +P + +K N + + T E+
Sbjct: 3046 NQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.40
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Frame = -2
Query: 589 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QD 416
Q+L +LAE L NE+ + + +D + AR ET Q++ R+ ++ D
Sbjct: 2926 QRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVD 2985
Query: 415 VIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVL 236
+ + L L + + + + + +L R+++ + +SD+ P S + L
Sbjct: 2986 DVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFL 3045
Query: 235 NKVKEAIPRNKFKAKHNRITLLEDYTREE 149
N+ +P + +K N + + T E+
Sbjct: 3046 NQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 616 LLPKIDDXTQKLTVANADLAEANRSLILFANEMIVARRDAE 494
++ KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4826 IIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 31.9 bits (69), Expect = 0.40
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Frame = -2
Query: 589 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIA--QD 416
Q+L +LAE L NE+ + + +D + AR ET Q++ R+ ++ D
Sbjct: 2926 QRLQELERNLAECQLHLTSSENEIETMKAVEKIHLEDLKIAREETDQISKRIDEVRLFVD 2985
Query: 415 VIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVL 236
+ + L L + + + + + +L R+++ + +SD+ P S + L
Sbjct: 2986 DVNDAAARLLAEDLKLDEHAKGQIEHVNKRYSTLKRAIRIRQAAVRNAASDFGPTSEHFL 3045
Query: 235 NKVKEAIPRNKFKAKHNRITLLEDYTREE 149
N+ +P + +K N + + T E+
Sbjct: 3046 NQ-SVTLPWQRAISKSNLLPYYIEQTSEK 3073
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 616 LLPKIDDXTQKLTVANADLAEANRSLILFANEMIVARRDAE 494
++ KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4186 IIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 616 LLPKIDDXTQKLTVANADLAEANRSLILFANEMIVARRDAE 494
++ KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4826 IIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 616 LLPKIDDXTQKLTVANADLAEANRSLILFANEMIVARRDAE 494
++ KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4826 IIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 616 LLPKIDDXTQKLTVANADLAEANRSLILFANEMIVARRDAE 494
++ KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4186 IIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4226
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 616 LLPKIDDXTQKLTVANADLAEANRSLILFANEMIVARRDAE 494
++ KIDD T +L + +ADL +A + NE A+ DA+
Sbjct: 4826 IIEKIDDTTYRLIIPSADLKDAGEYTVEVINESGKAKSDAK 4866
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -2
Query: 598 DXTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
D +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 418 DV 413
+
Sbjct: 1362 SI 1363
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -2
Query: 598 DXTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
D +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 418 DV 413
+
Sbjct: 1362 SI 1363
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.70
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -2
Query: 598 DXTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADIAQ 419
D +++ A + ANR + F+NE+ A+R AE ++ +N + LA + + +
Sbjct: 1302 DLARQVEELEAKIQAANRLKLQFSNELDHAKRQAEEESRERQNLSNLSKNLARELEQLKE 1361
Query: 418 DV 413
+
Sbjct: 1362 SI 1363
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -2
Query: 604 IDDXTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLANRMADI 425
+D+ +K A++ ++ R A E R E + + E +RE LA + DI
Sbjct: 1463 LDEWRRKCEALVAEVEQSQRETRAAATETFRLRNQLEESGEQTEAVKRENKALAQELKDI 1522
Query: 424 AQDV 413
A +
Sbjct: 1523 ADQL 1526
>Z37139-3|CAA85492.2| 793|Caenorhabditis elegans Hypothetical
protein C14B1.6 protein.
Length = 793
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 208 NKFKAKHNRITLLEDYTREELMNVIGSTMTDRQIARMNSLRNAQ*KFLYVVK 53
N + + LL YT EEL+ V G + D QIA +R VVK
Sbjct: 523 NYDQKRRQNFGLLRYYTLEELIEVFGLLLPDVQIAMRRGVRRENMPVSTVVK 574
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 303 RLRPSDRFCGRRNANSLLPTSHTARLWHSCG 395
RL+PS CG RN L P + A ++ S G
Sbjct: 53 RLKPSSEECGLRNTQPLAPITDIAVIFPSLG 83
>Z78018-2|CAB01447.1| 434|Caenorhabditis elegans Hypothetical
protein W07G4.2 protein.
Length = 434
Score = 28.3 bits (60), Expect = 4.9
Identities = 27/87 (31%), Positives = 37/87 (42%)
Frame = -2
Query: 472 NARRETAQLANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRL 293
N R T ++ VI S+ C A +GN+ F LG S ++L
Sbjct: 45 NDRNSTTNTLTSYENVQNSVICNFSDIN-CRLAAGMRLGNHIFEMAA----LLGMS-RQL 98
Query: 292 GSNDVIFSSDYVPNSMNVLNKVKEAIP 212
+ F D +N+LNKVKEAIP
Sbjct: 99 HRKSLFFVED--KTYLNMLNKVKEAIP 123
>U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform b protein.
Length = 679
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 414 TSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSAL--ATVNF 587
T+ AM LA+C + R +++L K + + S+L AT+ F
Sbjct: 215 TAIRKQAMLLAACVTFLTNLATDISVELKMVRRNLVALLVKCLQMSSESTSSLTTATIKF 274
Query: 588 CVXSSIFGNNIICIHFNG 641
+ SIF N I + NG
Sbjct: 275 LLKLSIFDENKIVMEQNG 292
>U28991-1|AAM22059.1| 696|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform a protein.
Length = 696
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 414 TSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSAL--ATVNF 587
T+ AM LA+C + R +++L K + + S+L AT+ F
Sbjct: 232 TAIRKQAMLLAACVTFLTNLATDISVELKMVRRNLVALLVKCLQMSSESTSSLTTATIKF 291
Query: 588 CVXSSIFGNNIICIHFNG 641
+ SIF N I + NG
Sbjct: 292 LLKLSIFDENKIVMEQNG 309
>AF149287-1|AAF99086.1| 696|Caenorhabditis elegans KAP protein.
Length = 696
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 414 TSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSAL--ATVNF 587
T+ AM LA+C + R +++L K + + S+L AT+ F
Sbjct: 232 TAIRKQAMLLAACVTFLTNLATDISVELKMVRRNLVALLVKCLQMSSESTSSLTTATIKF 291
Query: 588 CVXSSIFGNNIICIHFNG 641
+ SIF N I + NG
Sbjct: 292 LLKLSIFDENKIVMEQNG 309
>AF026215-4|AAB71322.1| 843|Caenorhabditis elegans Hypothetical
protein F09G2.4 protein.
Length = 843
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = -2
Query: 511 ARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQ 389
A RDAE R E ARR+ AQ AN D D IA P P+
Sbjct: 410 AERDAEETRLRMERARRQ-AQ-ANESDDSDDDDIAAPIVPR 448
>AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin
associated protein kap-1 protein.
Length = 679
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +3
Query: 414 TSCAMSAMRLASCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSAL--ATVNF 587
T+ AM LA+C + R +++L K + + S+L AT+ F
Sbjct: 215 TAIRKQAMLLAACVTFLTNLATDISVELKMVRRNLVALLVKCLQMSSESTSSLTTATIKF 274
Query: 588 CVXSSIFGNNIICIHFNG 641
+ SIF N I + NG
Sbjct: 275 LLKLSIFDENKIVMEQNG 292
>Z75546-7|CAA99895.1| 566|Caenorhabditis elegans Hypothetical
protein R05D11.8 protein.
Length = 566
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -2
Query: 373 AVCDVGNNEFAFLRPQKRSLGRSLKRLGSN-DVIFSSDYVPNSMNVLNKVKEAIP 212
+V D N + PQK + GRS K+ +N + +F P+ + + K P
Sbjct: 111 SVPDSSRNRSVAVSPQKSAKGRSPKKFATNVEKLFEHHSTPSKLTLAKKQSRQSP 165
>Z81056-2|CAB02901.2| 323|Caenorhabditis elegans Hypothetical
protein F09F3.2 protein.
Length = 323
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 396 LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAV 494
L+G+ IT+CA+SA+ + A+S + C +
Sbjct: 131 LIGIPITTCAISAVLFITLAISVLSLIAGCSCI 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,015,959
Number of Sequences: 27780
Number of extensions: 271206
Number of successful extensions: 798
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -