Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b19
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 29 1.2
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 28 2.2
04_04_0500 - 25677767-25680850 28 2.9
10_07_0162 - 13713504-13714754,13716445-13716522 27 3.8
04_03_0314 - 14238620-14240128 27 5.0
11_01_0583 + 4636832-4637521 27 6.6
05_01_0196 + 1415664-1416842 27 6.6
01_06_1417 - 37189068-37190321 27 6.6
07_01_0020 - 127855-129156,129240-129365,129811-129865,130047-13... 26 8.7
02_02_0522 - 11161385-11161537,11162513-11162668,11164176-111642... 26 8.7
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 26 8.7
01_01_0522 - 3834551-3835451,3835992-3836572 26 8.7
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 158 WREALQLQPSRITGI*WPEALYQS*LPPP**HQLHKFVKNR 36
W EAL L P + G P +LYQ L P +L++ V+ R
Sbjct: 192 WSEALNLSPPGVRGGALPPSLYQHLLRAPGPPKLYRGVRQR 232
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 142 SFSPVVLREFNGRKHYIKVDCRRHDSTNSISLSKTDNCCSST 17
SF V EF H + C+ HD + ++ TD C S+T
Sbjct: 1347 SFLQDVKEEFIIGYHCDSIVCKMHDLMHDLAKDVTDECASTT 1388
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 256 PNSQHRRRSRSLHGRVFDPNRGTSARLQRIGNN 158
P ++H + R+LHGR+ RG S L R+G++
Sbjct: 67 PRARHSQTCRALHGRIL---RGGSPLLGRLGDS 96
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 214 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 104
RV+DPN GT A+ ++ G +F L NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375
>04_03_0314 - 14238620-14240128
Length = 502
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 134 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 271
+ ++ L + P + P R + + NPP APPT +R P
Sbjct: 6 SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48
>11_01_0583 + 4636832-4637521
Length = 229
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 98 MLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRTAPP 238
+L A KF Y W+ ++ A++P+ L + AT + +P + A P
Sbjct: 182 VLLATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227
>05_01_0196 + 1415664-1416842
Length = 392
Score = 26.6 bits (56), Expect = 6.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 31 SYLFLTNLWSWCYHGGGSQL*YNASGH*IPVIRLG*SCNASRHYSRCA 174
+Y F T SW H G L + G +P ++L +A +Y+ CA
Sbjct: 227 TYCFDTVSCSWS-HAGDWMLPFCGKGEYVPELKLWFGVSAKNNYAPCA 273
>01_06_1417 - 37189068-37190321
Length = 417
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 105 GSIISKLTAAAMIAPTP*VCQKQITAARQHI 13
G+I++ L+AA + VC+K TA R+H+
Sbjct: 10 GNILAHLSAARDVMVASGVCRKWRTACRKHL 40
>07_01_0020 -
127855-129156,129240-129365,129811-129865,130047-130177
Length = 537
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 82 CRRHDSTNSISLSKTDNCCSSTYS 11
CR H + N I L K + CSS+YS
Sbjct: 92 CRSHGNGNGI-LDKIEAACSSSYS 114
>02_02_0522 -
11161385-11161537,11162513-11162668,11164176-11164298,
11164404-11164466,11164512-11164577,11165128-11165232,
11165336-11165435,11165520-11165590,11166037-11166093,
11167215-11167292,11167367-11167441,11168490-11168540,
11169015-11169094,11169560-11169660,11169749-11169810,
11170084-11170590
Length = 615
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 100 HYIKVDCRRHDSTNSISLSKTDNCCSST 17
HY ++ C S ++ S+TD+C S T
Sbjct: 178 HYKRIHCELLSSRSAGDCSETDSCASDT 205
>01_07_0374 + 43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 26.2 bits (55), Expect = 8.7
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 161 IPDALKPSRGATIGIKNP---PMQRTAPPTMLTIRAVKNPMILKSQ*LLTRYT 310
+PDA P+ GA G P P+ R A + + +++ P K LL R T
Sbjct: 958 LPDADGPAAGAGAGATTPPPLPLTRVASKSKVPLQSFLFPAKAKKPSLLARVT 1010
>01_01_0522 - 3834551-3835451,3835992-3836572
Length = 493
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 158 IIPDALKPSRGATIGIKN--PPMQRTAPPTM 244
++P L+P+R A G K PP PPT+
Sbjct: 243 VVPKLLRPARSAAAGGKPPLPPPSSCVPPTI 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,857,941
Number of Sequences: 37544
Number of extensions: 225831
Number of successful extensions: 561
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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