Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b16
         (471 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a pr...   151   1e-36
BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a ...   151   1e-36
AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A ...   151   1e-36
BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for IM...   150   2e-36
BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a ...   145   8e-35
AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a ...   133   3e-31
AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a ...    46   9e-05
AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.             29   6.1  

>U14968-1|AAA85656.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  151 bits (366), Expect = 1e-36
 Identities = 73/145 (50%), Positives = 90/145 (62%)
 Frame = -3

Query: 436 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 77
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 76  PVIVXXXXXXXXXXXXXKDVGGACV 2
           PVIV             K VGGACV
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACV 145


>BC005326-1|AAH05326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  151 bits (366), Expect = 1e-36
 Identities = 73/145 (50%), Positives = 90/145 (62%)
 Frame = -3

Query: 436 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 77
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 76  PVIVXXXXXXXXXXXXXKDVGGACV 2
           PVIV             K VGGACV
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACV 145


>AB020236-1|BAA77361.1|  148|Homo sapiens ribosomal protein L27A
           protein.
          Length = 148

 Score =  151 bits (366), Expect = 1e-36
 Identities = 73/145 (50%), Positives = 90/145 (62%)
 Frame = -3

Query: 436 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 77
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQ
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120

Query: 76  PVIVXXXXXXXXXXXXXKDVGGACV 2
           PVIV             K VGGACV
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGACV 145


>BC020169-1|AAH20169.1|  147|Homo sapiens Unknown (protein for
           IMAGE:3543815) protein.
          Length = 147

 Score =  150 bits (364), Expect = 2e-36
 Identities = 72/140 (51%), Positives = 88/140 (62%)
 Frame = -3

Query: 421 KKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFHFRK 242
           +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM+++H ++
Sbjct: 5   RKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKR 64

Query: 241 NKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPVIVX 62
           N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          LPKQPVIV 
Sbjct: 65  NQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVK 124

Query: 61  XXXXXXXXXXXXKDVGGACV 2
                       K VGGACV
Sbjct: 125 AKFFSRRAEEKIKSVGGACV 144


>BC066326-1|AAH66326.1|  148|Homo sapiens ribosomal protein L27a
           protein.
          Length = 148

 Score =  145 bits (351), Expect = 8e-35
 Identities = 71/145 (48%), Positives = 89/145 (61%)
 Frame = -3

Query: 436 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 77
           ++ ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++          L KQ
Sbjct: 61  YNLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLAKQ 120

Query: 76  PVIVXXXXXXXXXXXXXKDVGGACV 2
           PVIV             K VGGACV
Sbjct: 121 PVIVKAKLFSRRAEEKIKSVGGACV 145


>AJ400879-2|CAC35388.1|  106|Homo sapiens ribosomal protein L27a
           protein.
          Length = 106

 Score =  133 bits (322), Expect = 3e-31
 Identities = 58/106 (54%), Positives = 75/106 (70%)
 Frame = -3

Query: 436 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 257
           M +  +KTRKLRGHVS                GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60

Query: 256 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 119
           +H ++N++FCP +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 106


>AB007178-1|BAA25837.1|   34|Homo sapiens ribosomal protein L27a
           protein.
          Length = 34

 Score = 45.6 bits (103), Expect = 9e-05
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = -3

Query: 220 LNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKA 119
           +NLDKLWTLVSEQTR+  A    G  P+I++V++
Sbjct: 1   VNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRS 34


>AY358091-1|AAQ88458.1|  126|Homo sapiens VFLL3057 protein.
          Length = 126

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 267 PSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLVF 419
           P+LPK+PG  ++ L   W S    P P G +    + PCP       PL FLV+
Sbjct: 55  PALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLVW 104


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,931,122
Number of Sequences: 237096
Number of extensions: 1398315
Number of successful extensions: 2862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2855
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)