Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b14
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.2  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   7.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.5  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 419  RIDRLLFETLFREFAQQSVSG 357
            R++ LL +  FREFA+ SVSG
Sbjct: 1600 RVEPLLVKDTFREFAEASVSG 1620


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 631 DMCVPFVKECKKATIGLRQEDHERVLSILNAQCNGFST 518
           + C+P +      T+GL++ D  RV++ +N + NG ST
Sbjct: 826 EACIPSLNPDTLRTLGLKEGDIIRVMNHVN-ELNGVST 862


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 407 LLFETLFREFAQQSVSGSGV 348
           + F++  R+FA+QS+ GSGV
Sbjct: 358 IYFDSKTRKFAKQSLDGSGV 377


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 114 YHRYHLLKQSWLSSISRDISLS 179
           Y++  L K+SW  S+S +ISLS
Sbjct: 107 YYQEALRKKSWSRSLSNNISLS 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,685
Number of Sequences: 5004
Number of extensions: 52610
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)