Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b14
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              25   0.65 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.6  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 311 LAHDETTNVAEFQ---LRYRIRFVGQTL*IVSQIKADQYG 421
           L + E +++ EF+    +YR + +G+T   +  ++A +YG
Sbjct: 21  LVYGEISDIDEFREMTSKYRKKCIGETKTTIEDVEATEYG 60


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -2

Query: 112 GHWQQHVANTKKPPQQTAGKPFGANANGGRR 20
           GHWQ        PP+QT   P     +G RR
Sbjct: 383 GHWQMSCVACSPPPRQT---PPSRKESGRRR 410


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 420 VDAILLTFFMLVLRPIFIIKFLN 488
           V+  +  FFM++  PIFI    N
Sbjct: 88  VNLAICDFFMMIKTPIFIYNSFN 110


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 534 HCAFKILNTRS*SSWRNPMVAFLHSLT 614
           H  F I NT       NPM+A L +L+
Sbjct: 175 HVQFLITNTSGPGVVSNPMIAELETLS 201


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 534 HCAFKILNTRS*SSWRNPMVAFLHSLT 614
           H  F I NT       NPM+A L +L+
Sbjct: 175 HVQFLITNTSGPGVVSNPMIAELETLS 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,605
Number of Sequences: 438
Number of extensions: 3825
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)