Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b13
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.28 
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    29   0.36 
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.5  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       26   2.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.8  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   7.8  

>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 467 HVYSRPAVY*PAVFGSKSKRNRLRRNH*IGQRRHHIQAPCR*QKSHRHSKRHY 309
           H  SR     PA    + ++ R R NH  G  R H        + HRHS  +Y
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNY 173


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 302 HTRNGVLNDDA---ISVNGKALECGVGVVRFNGSAVNGSVWIYCQK 430
           HT NG ++D+     S  G+   C  G+V  +  A +G ++I C +
Sbjct: 28  HTPNGSVSDNEENETSSTGEVTRCVCGIVESDDEASDGGLYIQCDQ 73


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 259  TLSDDCFMREIMEKNNYNTYYKMYDRKLTYVAL 161
            T++D  F++ I+ K  YN YY +YD   T V L
Sbjct: 1615 TVNDFLFLQTILRKI-YNFYYALYDVPTTDVEL 1646


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = -3

Query: 397 GGTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEK 218
           GG +  + A    +++  DRN  V   A+  + +C+  CG  +  +  S + F+ E++ +
Sbjct: 39  GGNLPREAAFAIVRKVN-DRNPTVAYLALNLLDICVKNCGYAFRLQIASKE-FLNELVRR 96


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 118  GPLKSVVFGEYRRSSVPHTSTCDRTFYNT 204
            GP+K   FG YR   +   S  D   Y++
Sbjct: 920  GPVKIACFGSYRTGLMTKNSDLDLVIYSS 948


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 142 GEYRRSSVPHTSTCDRTF 195
           G  R +S  +TSTCD++F
Sbjct: 351 GPVRTTSYSYTSTCDKSF 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,997,547
Number of Sequences: 5004
Number of extensions: 39024
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)