Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b13
         (480 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    29   0.11 
AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding pr...    24   2.4  
AF437888-1|AAL84183.1|  154|Anopheles gambiae odorant binding pr...    24   2.4  
AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein protein.    23   4.1  
AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative acetyltr...    23   7.2  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    22   9.5  
AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    22   9.5  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 322 QNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDR 182
           ++ I CV LC   C  L+  + L ++  M++   K++   +Y  YD+
Sbjct: 451 EHVIGCV-LCSPGCFSLFRGRALMENSVMKKYTTKSDQARHYVQYDQ 496


>AY146729-1|AAO12089.1|  156|Anopheles gambiae odorant-binding
           protein AgamOBP5 protein.
          Length = 156

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 169 HTSTCDRTFYNTYC 210
           +  +CD+TFY+T C
Sbjct: 131 YKDSCDKTFYSTKC 144


>AF437888-1|AAL84183.1|  154|Anopheles gambiae odorant binding
           protein protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 169 HTSTCDRTFYNTYC 210
           +  +CD+TFY+T C
Sbjct: 129 YKDSCDKTFYSTKC 142


>AF457565-1|AAL68795.1|  391|Anopheles gambiae TRIO protein protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 266 SVQLATPVYAQVHTRNGVLNDDAISV 343
           +V+LAT V  ++  R  +LND  + +
Sbjct: 223 AVELATVVNPELENRENLLNDQVVQL 248


>AJ439060-14|CAD27765.1|  471|Anopheles gambiae putative
           acetyltransferase protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -2

Query: 332 HRHSKRHYVCVPVHRPVWPTVRIKNF 255
           HRH +    CV +    WP  R+  F
Sbjct: 245 HRHPELKEQCVRLINTEWPRSRMARF 270


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 63  KLKRFNKVMAYTLNLPSLRPF-EICSFRGVPSFFSATYVNL 182
           K  +  K   Y L+L  L    +IC+  G+P F +AT +++
Sbjct: 842 KEHKLTKGCGYHLDLFVLACLIQICTMMGLPWFVAATVLSI 882


>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 225 IISLIKQSSDKVFDPYSW 278
           I+  +K   DK++DP  W
Sbjct: 310 IVYFLKPQWDKIYDPKVW 327


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,818
Number of Sequences: 2352
Number of extensions: 9911
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 41863041
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)