Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc15b13
(480 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein ... 45 2e-05
AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 prote... 45 2e-05
Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical pr... 30 1.00
Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z72518-2|CAA96700.1| 613|Caenorhabditis elegans Hypothetical pr... 27 5.3
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 27 7.0
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 27 7.0
U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical pr... 27 9.3
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 27 9.3
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 27 9.3
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 27 9.3
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 27 9.3
>U00048-1|AAB53825.2| 425|Caenorhabditis elegans Lethal protein 756
protein.
Length = 425
Score = 45.2 bits (102), Expect = 2e-05
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Frame = -3
Query: 394 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 221
GT E + + + ++V + + I+ T ++C+D G+LY S S +C E M
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162
Query: 220 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 56
+N YN Y Y + Y+ L+ G PR+ SK R+ + L RL P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220
>AJ010553-1|CAA09234.1| 425|Caenorhabditis elegans LET-756 protein
protein.
Length = 425
Score = 45.2 bits (102), Expect = 2e-05
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Frame = -3
Query: 394 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 221
GT E + + + ++V + + I+ T ++C+D G+LY S S +C E M
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162
Query: 220 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 56
+N YN Y Y + Y+ L+ G PR+ SK R+ + L RL P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220
>Z93378-3|CAB07585.3| 749|Caenorhabditis elegans Hypothetical
protein F19H8.4 protein.
Length = 749
Score = 29.9 bits (64), Expect = 1.00
Identities = 22/80 (27%), Positives = 31/80 (38%)
Frame = -3
Query: 253 SDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLK 74
S C MR + Y K R+ + TP+ ++S + K L K
Sbjct: 98 SSKCVMRA---REQYKVQRKWQPRRPAAIPTTTVKTPKLKKLS----IKKVEAMRKALPK 150
Query: 73 RLSFPIYTSCPNIKNETIVQ 14
L FP T P I+NE +Q
Sbjct: 151 ELQFPTATEVPKIRNEVKIQ 170
>Z50742-5|CAA90618.2| 650|Caenorhabditis elegans Hypothetical
protein K09A11.5 protein.
Length = 650
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 331 CDFCQRQGA*MWCRRCPIQWFRRKRFRLDLLPKTAG 438
C C R+G +WC CP F K D P+ G
Sbjct: 53 CCICARRGEVLWCHSCPAS-FHIKCLGYDTDPQPNG 87
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 398 RRNH*IGQRRHHIQAPCR*QKSHR-HSKR 315
+RN +G+R+ +I+A R QK H+ H KR
Sbjct: 2859 KRNDLLGERKENIRASMRLQKLHQEHEKR 2887
>Z72518-2|CAA96700.1| 613|Caenorhabditis elegans Hypothetical
protein ZC374.2 protein.
Length = 613
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 392 NH*IGQRRHHIQAPCR*QKSHRHSKRHYVCVPVHRPVWPTVRIKN 258
NH + H Q P + Q +HS+ H+ VP P+ P I N
Sbjct: 142 NHHVHPHPHQQQTPVQPQTHGQHSQGHHQ-VPAQSPIAPAGPIVN 185
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 417 IQTEPFTAEPLNRTTPTPHSSALPLTEIASSFKTPLRVCTCA*TGVANCTDQKL 256
IQ EP P + P P +S+LPL E P + A V+N D+ +
Sbjct: 144 IQIEP--TSPAHPEDPQPSTSSLPLVEPIEDIVEPNEPTSSADPPVSNIKDEDI 195
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 417 IQTEPFTAEPLNRTTPTPHSSALPLTEIASSFKTPLRVCTCA*TGVANCTDQKL 256
IQ EP P + P P +S+LPL E P + A V+N D+ +
Sbjct: 158 IQIEP--TSPAHPEDPQPSTSSLPLVEPIEDIVEPNEPTSSADPPVSNIKDEDI 209
>U13875-6|AAK67213.1| 390|Caenorhabditis elegans Hypothetical
protein C26E6.12 protein.
Length = 390
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 317 VLNDDAISVNGKALECGVGVVRFNGSAVNGSVWIYCQKP 433
VL D VN KA G G+ R+NG NG + KP
Sbjct: 24 VLKIDKYLVNIKAGSGGSGLSRYNGVGGNGGDIYFVAKP 62
>Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical
protein F17A2.3 protein.
Length = 463
Score = 26.6 bits (56), Expect = 9.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +1
Query: 313 WRFE*RCDFCQRQGA*MWCRRCP 381
W + +C C G +WC CP
Sbjct: 24 WPEQNKCGMCADGGTIIWCETCP 46
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 26.6 bits (56), Expect = 9.3
Identities = 23/99 (23%), Positives = 42/99 (42%)
Frame = -3
Query: 346 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDRKLTYV 167
VD N +N +T Y+ +D + D E+ +K N Y ++
Sbjct: 3793 VDVNPAATENNVTRYYVVVDE-------RDPPGDTNWTELTDKVTANKMKIPYYVAASF- 3844
Query: 166 ALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 50
L+ PRK++I G +G + Y + K+ ++ +YT
Sbjct: 3845 NLETLPEPRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 26.6 bits (56), Expect = 9.3
Identities = 23/99 (23%), Positives = 42/99 (42%)
Frame = -3
Query: 346 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDRKLTYV 167
VD N +N +T Y+ +D + D E+ +K N Y ++
Sbjct: 3793 VDVNPAATENNVTRYYVVVDE-------RDPPGDTNWTELTDKVTANKMKIPYYVAASF- 3844
Query: 166 ALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 50
L+ PRK++I G +G + Y + K+ ++ +YT
Sbjct: 3845 NLETLPEPRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 26.6 bits (56), Expect = 9.3
Identities = 23/99 (23%), Positives = 42/99 (42%)
Frame = -3
Query: 346 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDRKLTYV 167
VD N +N +T Y+ +D + D E+ +K N Y ++
Sbjct: 3793 VDVNPAATENNVTRYYVVVDE-------RDPPGDTNWTELTDKVTANKMKIPYYVAASF- 3844
Query: 166 ALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 50
L+ PRK++I G +G + Y + K+ ++ +YT
Sbjct: 3845 NLETLPEPRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 26.6 bits (56), Expect = 9.3
Identities = 23/99 (23%), Positives = 42/99 (42%)
Frame = -3
Query: 346 VDRNRIVIQNAITCVYLCIDRCGQLYGSKTLSDDCFMREIMEKNNYNTYYKMYDRKLTYV 167
VD N +N +T Y+ +D + D E+ +K N Y ++
Sbjct: 3793 VDVNPAATENNVTRYYVVVDE-------RDPPGDTNWTELTDKVTANKMKIPYYVAASF- 3844
Query: 166 ALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPIYT 50
L+ PRK++I G +G + Y + K+ ++ +YT
Sbjct: 3845 NLETLPEPRKVRIGDGSVIGGYLNYPLVKGKKYNYEVYT 3883
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,183
Number of Sequences: 27780
Number of extensions: 227217
Number of successful extensions: 645
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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