Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b12
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    28   1.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.6  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   3.8  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   5.0  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   5.0  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    26   5.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.6  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 595 ENVAFLAPLSASANIFNYMAELATRAGKQPSMFQNATFLTSAANAVN 455
           E ++FL  ++ +A     MA +A +     S+FQN+ +L    + +N
Sbjct: 708 EKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVESRIN 754


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -1

Query: 239 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 147
           +C Y+L+    Q +G +Y G T +  RR++QH+ +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 548 QLHGRAGDASRQATQHVPKRYLPNVGRQRGQF 453
           + H R+ DAS +A +   + + P++ R+R +F
Sbjct: 510 RFHSRSVDASPKAVRRESRSFFPSLTRKRSKF 541


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = -2

Query: 616 ARIMSLKENVAFLAPLSASANIFNYMAELATRAGKQPSMFQNATFLTSAANAVNSPAAHL 437
           ++I +L  + +     S SA++ + +A   +    +PS   ++T       +VNSPA   
Sbjct: 154 SQISTLSMSPSSTPVFSPSASVSSKVASSVSYVSSEPSDSSSSTNTVILTTSVNSPAVSS 213

Query: 436 TKNACQDSLT 407
           ++     S+T
Sbjct: 214 SETLTSVSIT 223


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 466 NAVNSPAAHLTKNACQDSLTELAFQNETLRRFIFQQI 356
           N +   A +  K+A Q +    AF+N  LRR +F  I
Sbjct: 360 NPLERVAYYALKSAAQKAKLIAAFENRQLRRLVFSLI 396


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 748 HTERSRVASLP-HINMINDLINAVIDDLFAGGGDYYHYVLNEKNRARIMSLKENVAF 581
           H E+++   L  H++ +NDLI A + D   G       VL+E N  R  + +E  AF
Sbjct: 478 HEEQNKSLKLQEHVDTVNDLI-AELQDELRGIESRLTSVLSECNMLRETASEEKNAF 533


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 121  ALRKHLAPCLFECCFMRLLRLLVMPV 198
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,961
Number of Sequences: 5004
Number of extensions: 46816
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)