Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b12
         (752 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060601-1|AAL28149.1|  470|Drosophila melanogaster GH01839p pro...    32   0.97 
AE013599-570|AAF59148.2|  470|Drosophila melanogaster CG14762-PA...    32   0.97 
M82887-1|AAB59218.1|  640|Drosophila melanogaster dual bar prote...    29   5.2  
M82884-1|AAA28383.2|  645|Drosophila melanogaster dual bar prote...    29   9.0  
BT022144-1|AAY51539.1|  645|Drosophila melanogaster IP01479p pro...    29   9.0  
AE014298-2565|AAF48725.1|  645|Drosophila melanogaster CG5488-PA...    29   9.0  

>AY060601-1|AAL28149.1|  470|Drosophila melanogaster GH01839p
           protein.
          Length = 470

 Score = 31.9 bits (69), Expect = 0.97
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -2

Query: 721 LPHINMINDLINAVIDDLFAGGGDYYHYVLNEKNRARIMS--LKENVAFLAPLSASAN 554
           L H+++ N+ IN + +D F G GD   ++  +KN  +++   L EN+  L  L+   N
Sbjct: 325 LRHLDLRNNNINVLAEDAFTGFGDSLTFLNLQKNDIKVLPSLLFENLNSLETLNLQNN 382


>AE013599-570|AAF59148.2|  470|Drosophila melanogaster CG14762-PA
           protein.
          Length = 470

 Score = 31.9 bits (69), Expect = 0.97
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = -2

Query: 721 LPHINMINDLINAVIDDLFAGGGDYYHYVLNEKNRARIMS--LKENVAFLAPLSASAN 554
           L H+++ N+ IN + +D F G GD   ++  +KN  +++   L EN+  L  L+   N
Sbjct: 325 LRHLDLRNNNINVLAEDAFTGFGDSLTFLNLQKNDIKVLPSLLFENLNSLETLNLQNN 382


>M82887-1|AAB59218.1|  640|Drosophila melanogaster dual bar protein
           protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -3

Query: 261 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 88
           DS  +Q +V  H    Q +  H HH+Q  Q H+ A  Q   Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQHQQAALQ---QYIVQQQQLLRFERERERE 151

Query: 87  RVRLQNRRPH 58
           R R   R  H
Sbjct: 152 REREHYRERH 161


>M82884-1|AAA28383.2|  645|Drosophila melanogaster dual bar protein
           protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 261 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 88
           DS  +Q +V  H    Q +  H HH+Q  Q  +   +   +Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQQQQHQQAALQQYIVQQQQLLRFERERERE 154

Query: 87  RVRLQNRRPH 58
           R R   R  H
Sbjct: 155 REREHYRERH 164


>BT022144-1|AAY51539.1|  645|Drosophila melanogaster IP01479p
           protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 261 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 88
           DS  +Q +V  H    Q +  H HH+Q  Q  +   +   +Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQQQQHQQAALQQYIVQQQQLLRFERERERE 154

Query: 87  RVRLQNRRPH 58
           R R   R  H
Sbjct: 155 REREHYRERH 164


>AE014298-2565|AAF48725.1|  645|Drosophila melanogaster CG5488-PA
           protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 261 DSVHQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFT--ARVSQRE 88
           DS  +Q +V  H    Q +  H HH+Q  Q  +   +   +Q   Q+ Q     R  +RE
Sbjct: 96  DSEREQSLVAQHHHHHQQQQQHHHHQQQ-QQQQQHQQAALQQYIVQQQQLLRFERERERE 154

Query: 87  RVRLQNRRPH 58
           R R   R  H
Sbjct: 155 REREHYRERH 164


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,489,234
Number of Sequences: 53049
Number of extensions: 550977
Number of successful extensions: 1878
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)