Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc15b09
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    29   0.70 
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   1.6  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   4.9  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   6.5  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 404  IWNSVFEHILIMRPSGSPPQLHTHF 330
            ++ S+ +H LI R   SPP +HT+F
Sbjct: 1722 LYTSLEKHNLISRSPSSPPPIHTNF 1746


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 222  LVEINIIITNPPSKLMNSQFSYYIKPKPRLLIGSWKKMCVQLWRRPTWSHNQYMFKYRIP 401
            +VE N   TN     + S    +I+PK  ++  SW   C++  ++ T+  N +   Y IP
Sbjct: 812  IVEANCEKTNNMRDPLTSTIFLHIQPKEPIIFCSWN--CMRKTKQGTYD-NVFDIPYNIP 868

Query: 402  NFK-NDAFESGSYFGNIS 452
                 D F S  +  ++S
Sbjct: 869  VLSPMDCFTSCHFDSDMS 886


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 186 SRRAL-GPSDIKCLVEINIIITNPPSKLMNSQFSYYIKPKPRL 311
           +R AL G  DI  L ++  + T+P   ++   F +YI P  ++
Sbjct: 99  ARDALRGNDDIALLHKVPSLDTDPEDAVLKDGFDWYISPSDKI 141


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +1

Query: 7   VQHSYFTCCNIVLQRLSGLLKFYFIR*LCKNFCLILN 117
           ++ S   CCN++ + ++ +  +  +   C +FC + N
Sbjct: 782 LEKSIQICCNVLKEDITSIFSWEILGDACLSFCQLKN 818


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,090
Number of Sequences: 5004
Number of extensions: 48675
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)